Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01000 ATGTTATTTATTTACATGGTAGTGAAAAAGGAAATAGATAACAGAAGGAAGAACGCAGTGGGCAGTGCAGAAGAGAGAGCAGAGAAACAGCATTTGGTTCACTGCCACACTCTCCTTTCTTCTCAGTTACTAACTCATGTGAACTCTCTGGCTATGACTGACGATACCATGTGTTCTCCAAGCGACAAGGACTTGTCGCTGAGTCCTAATCTTGATATCACGATAGATGATGGTTCTCCAAACAGTGAGCAACTTCTTGACATAGTGGATGAGGGCAACGAACTTGACAATGAATGTGGACAATTGTTTGATATTGATGGAAGTGAACGTGAAAATGGGAGGGATGAAACCACACTAATCGATAGTCATAGTGGAGAATCTCAAGGAAAAGACTGCCCCCCACCAGTTGTGGGAATGGAGTTTGATACTTACGATGATGCATACAACTATTACAATACCTATGCCAAGGAAATTGGATTTGCTACTCGAGTTAAATCTTCATGGACGAAACGTAACAGCAAAGAGAAGCGTGGTGCGGTTCTGTGCTGCAACTGTGAGGGTTTCAAAACAACCAAAGAAGCAAATAGTCACCGGAAAGAAACAAGAACGGGCTGTCTAGCAATGATTAGATTGAGATTAGTGGAATCTAACAGGTGGAGAGTCGATGAAGTCAAGCTTGAGCATAACCATTCATTTGATCCTGAAAGAGCACAAAACTCTAAATCACATAAGAGAATGGACAGTAGGGCCAAAAGAAAAGTTGAGCCAACTCTAGATGTTGAAGTAAGAACAATCAAGTTATATCGAATGCCTGTAGTAGATGCATCAGGTTATGGAAGCTCAAATTCCACTGAAGGTGGAACTAGCAACCACATTAATTGTTCCAAGCGTTTGAAACTTAAAAGGGGTGATCCGGAGCTTATTTCAAATTACTTCTGCCGCATTCAATTGACTAATCCTAACTTTTTCTATGTGATGGATCTGAATGATGATGGGCAACTGAGGAATGTATTTTGGATTGACTCTAGGTCTAGGGCTGCATATAGTTATTTTGGTGATGTGGTTGCATTCGACTCTACGTGTTTGTCAAACAACTATGAGATTCCTCTTGTTGCATTTGTTGGTGTTAATCACCATGGCAAATCTGTTTTGCTAGGATGTGGTCTGCTTGCAGATGAGACATTTGAAACATATATTTGGTTGTTTAGGGCATGGCTTACATGTATGACTGGTCGCCCTCCACAAACTATGATCACAAACCAGTGTAAGGCCTTGCAAAGTGCAATTGCAGAGGTTTTCCCGAGAGCTCACCATAGAATTTGCCTATCGCAAGTCATGCAGAGCATTCTTGGGTGTTTTGTGCAGTTTCAGGAGTACGAGGCATTTCAAATTGCGCTTACTAAAGTCATATATGACTCTAAAACAGTAGATGAGTTTGAAAGGGCTTGGGATGATCTAACCCAGCATTTTGGAATAAGAAATCACGAAAAGATCCTAACCTTGCATGAGGAACGAGAACATTGGGCTCCAGTGTACTCCAAAGACACATTTTTTGCTGGAATATCTGATTATGAAAAGGGTGAGTCTGTGGTTCCCTTTTTTAAGGGTCATGTGCATCAACAAACTTCTTTGAAAGATTTTTTTGAGATTTATGAATTAGTTCAGCAAAAAAAACATAAAACTGAAGTTCTTGATGATTTTGAGTCATGCGACTTGAGCTCATTACTGAAGACAAGATGCTACTACGAGTTGCAAATCTCTAAATTGTACACAAATGCTGTATTTAGGAAGTTCCAAGATGAGGTGGTGATGATGCCCTCTTGTTTCAGCATCACGCAGACTCAAACCAGTGGCTCCGTAGTGACGTACATGGTAAAAGAGCGCGAAGGGGAAGACCCTGCAACAGATGCTAGGCATTTTGAAGTCATATATGATAAAGGGGGAACAGAAGTACGCTGCATTTGTAGTTGCTTTAATTTCAAGGGCTACCTGTGCAGACATGCCTTGTATATCCTTAATTACAATGGTGTGGAGGAAATTCCATGTCAATACATTTTGTCAAGATGGAGAAAAGATTTTAGGCGTTTGTATGTACCTCATCTCAGTGCTGATAATGTTGATATTAGCAACCCAGTTCAGTGTTTTGATCATTTGTACAAACGTGCCATGCAAGTTGTTGAAGAAGGGATGATATCCCAAGATCATTATATGGTTTCTTGGCAAGCATTTAAAGAGTCTCTGAATAAGGTTCGCCTTGTAGCAGACAAGATTGAATAA 2277 0.4045 MLFIYMVVKKEIDNRRKNAVGSAEERAEKQHLVHCHTLLSSQLLTHVNSLAMTDDTMCSPSDKDLSLSPNLDITIDDGSPNSEQLLDIVDEGNELDNECGQLFDIDGSERENGRDETTLIDSHSGESQGKDCPPPVVGMEFDTYDDAYNYYNTYAKEIGFATRVKSSWTKRNSKEKRGAVLCCNCEGFKTTKEANSHRKETRTGCLAMIRLRLVESNRWRVDEVKLEHNHSFDPERAQNSKSHKRMDSRAKRKVEPTLDVEVRTIKLYRMPVVDASGYGSSNSTEGGTSNHINCSKRLKLKRGDPELISNYFCRIQLTNPNFFYVMDLNDDGQLRNVFWIDSRSRAAYSYFGDVVAFDSTCLSNNYEIPLVAFVGVNHHGKSVLLGCGLLADETFETYIWLFRAWLTCMTGRPPQTMITNQCKALQSAIAEVFPRAHHRICLSQVMQSILGCFVQFQEYEAFQIALTKVIYDSKTVDEFERAWDDLTQHFGIRNHEKILTLHEEREHWAPVYSKDTFFAGISDYEKGESVVPFFKGHVHQQTSLKDFFEIYELVQQKKHKTEVLDDFESCDLSSLLKTRCYYELQISKLYTNAVFRKFQDEVVMMPSCFSITQTQTSGSVVTYMVKEREGEDPATDARHFEVIYDKGGTEVRCICSCFNFKGYLCRHALYILNYNGVEEIPCQYILSRWRKDFRRLYVPHLSADNVDISNPVQCFDHLYKRAMQVVEEGMISQDHYMVSWQAFKESLNKVRLVADKIE 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01000 758 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 124 751 IPR031052 GO:0006355
Phco11g01000 758 Pfam FAR1 DNA-binding domain 149 233 IPR004330 -
Phco11g01000 758 MobiDBLite consensus disorder prediction 107 121 - -
Phco11g01000 758 ProSiteProfiles Zinc finger SWIM-type profile. 640 676 IPR007527 GO:0008270
Phco11g01000 758 MobiDBLite consensus disorder prediction 230 253 - -
Phco11g01000 758 SMART 26again6 651 678 IPR006564 GO:0008270
Phco11g01000 758 MobiDBLite consensus disorder prediction 107 135 - -
Phco11g01000 758 Pfam MULE transposase domain 354 447 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01000 Phco-Chr11 7373551 7378726 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Phco11g01000 MULE 1.7e-26 CL0219