Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00999 ATGCCTATATTGTTTATTTGTTTGATAAAAGAATTAAATAAACACATTTCTGCGAAACGTGAAAATTGCAGAAAATTTTTGGAATCTGTATTCTTTGAACAAAACACGAGATTGTGTATTTTAGGGAGCAAAAAAGCGCGTTTGAAGAGAACGAAGAAGAAGCGTAGTAAGCATGATGTGCTTCTGCTTGTATCTTTCAGACTGAGGATAGCAAATTCACGGTTGATGGAAGAGACCTCTCTCTGCTGTGAACAATTGCCGGATGGGGAATGCATCGAGGTTCAGAAAGACGAAGATGGAGCCCTGATTGAATTGGATTGTCAGAATGGTTTTCCTGAGGGGAGAAAGGAATTTGTTGCTCCTGCTGTTGGAATGGAGTTTGAGTCATACGATGATGCTTACAATTATTATATTTGCTATGCCAAGGAGGTGGGGTTTCGTGTACGGGTGAAGAATTCGTGGTTCAAGCGGAATAGCAGAGAGAAGTATGGTGCAGTGCTTTGCTGTAGCAGCCAGGGTTTCAAGAGAATAAAGGATGTTAATCATTTGAGGAAGGAGACGAGAACTGGTTGTCCTGCAATGATAAGGATGAGATTAGTGGAGTCACAGAGATGGCGGGTGCTTGAAGTTATGCTTGAACATAACCACATGTTGGGTGCTAAGATACACAGATTGGTTAAGAAGATGGGAACTGGGATGAAGAGGAAATCGTTGCCTAGTTCTGATGCTGAGGGGCAGACGATTAAGTTATATCGTGCACTTGTGATTGATACAGGAGGTGATGTAGTTTCAAACTCCAGTGCGAGAGAGGACAGAAGTGTCTGTGAGTTTTCTAGTAAGTTGAACCTTAGAAAAGGTGACACACAGGCTATTTATAATTTCCTCTGCCGAATGCAATTGACTAATCCAAACTTCTTTTACTTGATGGATTTCAATGACGAAGGGCATTTGAGGAATGCATTTTGGGTTGATGCTAGGTCCAGGGCTGCATGTGGTTATTTTGGCGATGTTATTTATTTTGATAACACCTATTTGTCAAACAAATTTGAAGTCCAGCTGGTGACTTTTGTTGGAATAAATCACCATGGTCATTCGGTGTTATTAGGATGTGGCCTGCTTGCAAGTGAAACTACAGAGTCTTATCTGTGGTTGTTTAGGACATGGGTTAAATGTATGTCAGGATGTTCCCCCCAAACTATTATTACCGATAGATGCAAGGCTTTGCAGAGAGCAATTATGGAGGTTTTTCCTAGATGTCGTCATTGTTTTGGCTTGTCATTAATTATGAAAAAATTACCAGAAAAATTGGGAGGTTTGCACAACTATGATGCACTCAGGAAAGCACTGATTAAAGCAGTTTATGAAACATTGAAAGTGATTGAGTTTGAAGCAGCATGGGGATTTATGATTCAACATTTTGGAGTTACTGATCATGAGTGGCTTCGTTCTCTGTATGAAGATCGAGTTCATTGGGCTCCGGTATTTTTGAAGGACACATTTTTTGCTGGAATGTCTGCAGCTCGGCCTGGTGAGAACATTACTCCTTTTTTTGATAGATACGTGCACAAACAGACTCCTCTGAAGGAGTTTCTTGATAAGTATGAATTAGCTCTTCACAAGAAGTACAAGGAAGAGTCTTTTGCAGATATTGAATCAAGGAGCTCAAGCCCCTTACTGAAAACTAGATGTTCCTTTGAATTGCAGCTCTCCAGATTGTACACTAGAGAAATGTTCATGAAATTCCAGTTAGAAGTGGAAGAAGTATATTCTTGTTTTGGGACAACGCAGTTACATGTGGATGGTCCCATCATAATTTTCTTGGTCAAGGAGCGTGTTTTGATTGAGGGAAACAGACGGGAGATTCGTGATTTTGAAGTTTTGTACAGTAGGACAGTAGGTGAAGTTCGTTGCATCTGTAGTTGCTTTAATTTTTATGGGTATCTTTGTCGACATGCACTGTGTGTGCTCAATTTTAATGGGGTTGAAGAGATACCTCACAGATACATTCTTTCGCGATGGAAGAAAGATTACAAGCGTCTTTATGTTCCTGATCACAGCTCTGGTACTGCTGATGATACTGATCGCATTCAATGGTCTAATCAGTTATTTAGAAGTGCCTTACAAGTTGTGGAGGAGGGGATACTTTCTCTAGATCATTACAATGTAGCGTTACAATCTTTAGAAGAATCACTTAGTAAGGTTCATGATGTAGAGCAGAGACATGGGTAA 2229 0.402 MPILFICLIKELNKHISAKRENCRKFLESVFFEQNTRLCILGSKKARLKRTKKKRSKHDVLLLVSFRLRIANSRLMEETSLCCEQLPDGECIEVQKDEDGALIELDCQNGFPEGRKEFVAPAVGMEFESYDDAYNYYICYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVNHLRKETRTGCPAMIRMRLVESQRWRVLEVMLEHNHMLGAKIHRLVKKMGTGMKRKSLPSSDAEGQTIKLYRALVIDTGGDVVSNSSAREDRSVCEFSSKLNLRKGDTQAIYNFLCRMQLTNPNFFYLMDFNDEGHLRNAFWVDARSRAACGYFGDVIYFDNTYLSNKFEVQLVTFVGINHHGHSVLLGCGLLASETTESYLWLFRTWVKCMSGCSPQTIITDRCKALQRAIMEVFPRCRHCFGLSLIMKKLPEKLGGLHNYDALRKALIKAVYETLKVIEFEAAWGFMIQHFGVTDHEWLRSLYEDRVHWAPVFLKDTFFAGMSAARPGENITPFFDRYVHKQTPLKEFLDKYELALHKKYKEESFADIESRSSSPLLKTRCSFELQLSRLYTREMFMKFQLEVEEVYSCFGTTQLHVDGPIIIFLVKERVLIEGNRREIRDFEVLYSRTVGEVRCICSCFNFYGYLCRHALCVLNFNGVEEIPHRYILSRWKKDYKRLYVPDHSSGTADDTDRIQWSNQLFRSALQVVEEGILSLDHYNVALQSLEESLSKVHDVEQRHG 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00999 742 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 108 736 IPR031052 GO:0006355
Phco11g00999 742 Pfam SWIM zinc finger 611 656 IPR007527 GO:0008270
Phco11g00999 742 SMART 26again6 635 662 IPR006564 GO:0008270
Phco11g00999 742 Pfam MULE transposase domain 337 431 IPR018289 -
Phco11g00999 742 Pfam FAR1 DNA-binding domain 135 218 IPR004330 -
Phco11g00999 742 ProSiteProfiles Zinc finger SWIM-type profile. 624 660 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00999 Phco-Chr11 7370833 7373415 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Phco11g00999 MULE 8e-30 CL0219