Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00992 ATGGAAGATTTCGTGTACATGTTGATCATGGGTGAAACAGTTTCACTATTCCTACTACTATTTTTCACTCATTTGTTGATTGGACAAGCAAATACAGCAACTCAGGATTACACTGCTCTGCTGACTCTAATGGGTGAATGGGAGAACACTCCACCTAATTGGGTGGGTTCAGATCCTTGCGGTGGTTGGGATGGCATCGAGTGTACAAATTCACGCATTACCTCCATATCATTAGCAAGCATGGATTTGTCTGGTCAGCTTACTTCAGATATTGGATTACTCTCTGAACTCCTGATCTTGGATCTGTCGTACAATAGGAATTTAACTGGACCACTTCCCAATAACATTGGAAACTTGAGAAAGCTGAGAAACTTACTTCTTATTAGTTGTGGTTTCACTGGTCCCATCCCAGCTACAATTGGAAATCTGGAACGGCTAGTCTTTCTATCTTTAAATTCCAATGGATTCACAGGGCCAATTCCAGCTGCCATTGGTAATCTCTCAAATTTGTATTGGCTAGACTTAGCTGAAAACCAGCTTGAGGGCCCCATCCCCATATCCAATGGAACTACTCCTGGTCTTGATATGATGCACCATACAAAACACTTTCATTTTGGGAGGAATAAACTTTCAGGAGACATACCGGCTCAACTTTTTAGCTCAGAAATGTCTCTCATTCATGTGCTTTTTGAAACCAACCGATTTACTGGAAGCATTCCATCTACACTTGGCCTTGTCAAGTCTCTGGAGGTGGTTCGTTTTGATAACAACTTTTTAAGTGGATCTTTGCCTCAGAACATCAGCAATCTTACAAGTGTTAGGGAACTGTTCCTGTCCAAAAATCGCCTGTCTGGTTCCCTCCCAAACCTTACCGGAATGAATTCCCTCAGTTACCTAGATGTGAGCAATAACAGTTTTGATCCATCAGAAATTCCATCATGGTTGTCAACTCTCTCAGCTTTGACGACAATAATGATGGAAGATACAAAACTTGAAGGAGCTATTCCTGTTTCTTTGTTCAACCTACAGCAACTGCAGACAGTGGTGCTGAAAAACAACAAGCTAAATGGCACTTTAGATATTGGCACATTCATCAGCAACCAACTGGACCTCCTCGATTTGCAGTCTAATTATATTGAAAAGTTTGAAGCGCAAATCGATGTATCTAAAGTGAAGATAATACTTTTGAATAATCCAATTTGCCAAGAGACAGGAGTTCCACAGAGTTATTGTTCCGTAACAACATCTAATGACTCATATTCAACGCCACCAGAAAACTGTGTACCTGTTCCCTGCAGCTTAGATCAGACATTAAGCCCCAAATGCAAATGTGCATACCCATATACAGGAACTTTATCTCTCAGAGCTCCTTCCTTCTCAGACTTGGGAAACCAGACTGTCTTTGTAACCCTGCAGTTAACTCTAATGCAGTTTTTTCAAGTTCATAATAAACCTGTGGATTCAGTTTCTTTAAGCAATCCAAGGAAAAATATATATCAGTACCTTGACTTGACTTTAAAATTATTTCCATCTGGCCAAGATCGTTTCAATCGAACTGGGATTTCCAGTATAGCCTTTCTTCTCAGCAACCAAACATACAAGCCTCCTTCAATGTTTGGACCATATTATTTTATTGCTGATGACTATGGAAACTATATGAATGACACTGTATTAGAAGGTCCTGTGACAACATCCAGTAAATCTTCAAATACTGGCATCATAGCTGGAGCTGCGGCTGGGGGTGCGGCCCTGTTGGTTTTGGTACTTGTTCTATTTGTGTATGCTCTCCAACGGAAGAATAAGTCAGTAAGAGCAACTGGAAAAAACAATCCTTTTGAACAATGGGATCCAGATGAGAGTAATAGTAGCATCCCACAGTTGAAAGGAGCAAGGCGCTTCAATTTTGAAGAGATACAAATCTGCACCAAAAACTTCTCACAAGTCAATAATATAGGATCTGGCGGTTATGGGAAGGTTTATCGGGGAACACTTCCCAACGGCCAACTAATTGCAGTCAAGCGAGCTCAGAAAGAATCTATGCAGGGAGGGTTGGAGTTTAAAACCGAGATTGAACTTCTATCAAGGGTCCACCATAAAAATCTTGTTAGCCTTATCGGTTTCTGCTTTGATCAAGGAGAACAAATGCTGATTTATGAGTACGTTGCAAATGGTACTTTGAAGGACACTCTTTCAGGGAAATCTGGAATTAGATTAGACTGGATTAGAAGGCTGAAAATAGCCCTTGGTGCTGCCAGGGGTCTGGACTATCTGCATGAACTTGCCAATCCTCCAATCATACACAGGGACATCAAATCCACTAACATCTTACTGGATGAACGCTTGAATGCTAAAGTATCTGATTTTGGTCTCTCCAAACCTTTAGGTGATGGTGCAAAAGGTTATATCACCACACAAGTCAAAGGAACAATGGGCTACTTGGACCCAGAGTATTATATGACTCAACAGTTGACTGAGAAAAGTGATGTTTACAGCTTTGGAGTGCTAATGTTGGAGCTGATAACTGCAAGAAGGCCAATAGAGCGAGGGAAGTATATTGTGAAAGTGGTCAAGGAAGCTATAGACAAGACAAAAGGCTTCTGTGGTCTTGAGGAAGTTCTAGATCCAACTATTGATTTCGGGACAGCACTGAATGGTTTTGAGAAGTTTGTGGATCTCTCCTTGCAGTGTGTTGAAGAGTCAAGTTCTGACAGGCCTACAATGAATTATGTGGTGAAAGAAATTGAGAACATGTTGCAGTTGGCTGGTTCAAGCCCCATTTTATCAGCATCAGCTTCCACTTCATCTAGTTATAACAATCCAACGAAGAGTTCCCTCCATCCTTACGAGAATGAATACTTTGATTCAAGTGTCGTCCTTCCACTGGCACAAGATATTACCAAAGATTGCCAAATTTGGGTGGGTTCAGATCCTAGGCAAGATTGGTATGGCATTAACTGCAGACACTCACGTGTTGTTTCCAAATCATTAACAGATTTTGGTTTAACAGGCAAACTTTCTGGAGATATTGGATCACTTTCTGAATTGGATAATCTGGATCTCTCATACAATAGGGGCCTAACAGGACCACTTCCACCAGAAATTGGAAACTTGAAGAAGCTAACGAAATTAACTCTTGTTGGTTGTGGTTTTACTGGTCGTATTCCAGATGAAATAGGATCTCTACAACACCTTGAATTCTTGATTTTTGGCAGCAATCAACTGGTTGGAAGCATTCCTGAAACTCTTGGGCTAGTTACGTGTTTGACATTGGTGCGCTTTGAAAATAATTTACTGGATGGATATGTGCCTCAGAGCCTCAACAACCTTATCAATGTCACAGACCTGTTGTTGTCCAACAATAAGCTGCATGTTGCCCTGCCAAACCTTACTGGGATGAACTCCCTAAAATACTTGCTAGTAACAAAGTGTTTGTCTGTGACAGTCTTGGATCTGAGCAACAATGGCTTTGATAAGTCAAGCTTTCCACTGTGGCTTTCGAATCTGAAGAATTTAATAACATTTGTGCTGAAAGACAACCGCCTTGGTGGAACTTTGGATATTGGCACCAACTATAGCAAACAACTGCAACTTATTGATTTAACTTCAAATTCAATTGAGGACTTCAAGCAACGAAATGATCCCCCACAAATCAGGATAACAACCAACCCGATTTGCACAGAAACAGGAATTATGGAGGATTACTGCACCAACCTCAATATGTCCCATACAAAACCACAAAATAACTGTCAACAAGGTAGCTGCAGCCCAGATCAGATTCTCAGCCCCAAATGCAAATGTGGATACGCGTATACAGGAACTTTGACTTGCAGGGCCCCTTCCTATTTTGAATCTTAA 3855 0.4101 MEDFVYMLIMGETVSLFLLLFFTHLLIGQANTATQDYTALLTLMGEWENTPPNWVGSDPCGGWDGIECTNSRITSISLASMDLSGQLTSDIGLLSELLILDLSYNRNLTGPLPNNIGNLRKLRNLLLISCGFTGPIPATIGNLERLVFLSLNSNGFTGPIPAAIGNLSNLYWLDLAENQLEGPIPISNGTTPGLDMMHHTKHFHFGRNKLSGDIPAQLFSSEMSLIHVLFETNRFTGSIPSTLGLVKSLEVVRFDNNFLSGSLPQNISNLTSVRELFLSKNRLSGSLPNLTGMNSLSYLDVSNNSFDPSEIPSWLSTLSALTTIMMEDTKLEGAIPVSLFNLQQLQTVVLKNNKLNGTLDIGTFISNQLDLLDLQSNYIEKFEAQIDVSKVKIILLNNPICQETGVPQSYCSVTTSNDSYSTPPENCVPVPCSLDQTLSPKCKCAYPYTGTLSLRAPSFSDLGNQTVFVTLQLTLMQFFQVHNKPVDSVSLSNPRKNIYQYLDLTLKLFPSGQDRFNRTGISSIAFLLSNQTYKPPSMFGPYYFIADDYGNYMNDTVLEGPVTTSSKSSNTGIIAGAAAGGAALLVLVLVLFVYALQRKNKSVRATGKNNPFEQWDPDESNSSIPQLKGARRFNFEEIQICTKNFSQVNNIGSGGYGKVYRGTLPNGQLIAVKRAQKESMQGGLEFKTEIELLSRVHHKNLVSLIGFCFDQGEQMLIYEYVANGTLKDTLSGKSGIRLDWIRRLKIALGAARGLDYLHELANPPIIHRDIKSTNILLDERLNAKVSDFGLSKPLGDGAKGYITTQVKGTMGYLDPEYYMTQQLTEKSDVYSFGVLMLELITARRPIERGKYIVKVVKEAIDKTKGFCGLEEVLDPTIDFGTALNGFEKFVDLSLQCVEESSSDRPTMNYVVKEIENMLQLAGSSPILSASASTSSSYNNPTKSSLHPYENEYFDSSVVLPLAQDITKDCQIWVGSDPRQDWYGINCRHSRVVSKSLTDFGLTGKLSGDIGSLSELDNLDLSYNRGLTGPLPPEIGNLKKLTKLTLVGCGFTGRIPDEIGSLQHLEFLIFGSNQLVGSIPETLGLVTCLTLVRFENNLLDGYVPQSLNNLINVTDLLLSNNKLHVALPNLTGMNSLKYLLVTKCLSVTVLDLSNNGFDKSSFPLWLSNLKNLITFVLKDNRLGGTLDIGTNYSKQLQLIDLTSNSIEDFKQRNDPPQIRITTNPICTETGIMEDYCTNLNMSHTKPQNNCQQGSCSPDQILSPKCKCGYAYTGTLTCRAPSYFES 1284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00992 1284 FunFam Leucine-rich repeat family protein 953 1107 - -
Phco11g00992 1284 FunFam Leucine-rich repeat protein kinase family protein 611 720 - -
Phco11g00992 1284 ProSiteProfiles Protein kinase domain profile. 645 918 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00992 1284 Gene3D Ribonuclease Inhibitor 1143 1243 IPR032675 -
Phco11g00992 1284 SUPERFAMILY L domain-like 979 1208 - -
Phco11g00992 1284 ProSitePatterns Protein kinases ATP-binding region signature. 651 673 IPR017441 GO:0005524
Phco11g00992 1284 CDD STKc_IRAK 651 917 - -
Phco11g00992 1284 FunFam Leucine-rich repeat protein kinase family protein 190 289 - -
Phco11g00992 1284 Gene3D Phosphorylase Kinase; domain 1 616 720 - -
Phco11g00992 1284 FunFam Leucine-rich repeat family protein 35 189 - -
Phco11g00992 1284 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 721 930 - -
Phco11g00992 1284 Gene3D Ribonuclease Inhibitor 1062 1142 IPR032675 -
Phco11g00992 1284 Gene3D Ribonuclease Inhibitor 194 400 IPR032675 -
Phco11g00992 1284 Gene3D Ribonuclease Inhibitor 33 191 IPR032675 -
Phco11g00992 1284 ProSitePatterns Serine/Threonine protein kinases active-site signature. 765 777 IPR008271 GO:0004672|GO:0006468
Phco11g00992 1284 Gene3D Transferase(Phosphotransferase) domain 1 721 926 - -
Phco11g00992 1284 SMART serkin_6 645 920 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00992 1284 PANTHER RECEPTOR-LIKE PROTEIN 55 50 917 - -
Phco11g00992 1284 Gene3D Ribonuclease Inhibitor 957 1061 IPR032675 -
Phco11g00992 1284 SUPERFAMILY Protein kinase-like (PK-like) 631 943 IPR011009 -
Phco11g00992 1284 SUPERFAMILY L domain-like 67 394 - -
Phco11g00992 1284 Pfam Protein kinase domain 646 912 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00992 Phco-Chr11 7296946 7311857 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Phco11g00992 Pkinase 1.9e-46 CL0016