Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00975 ATGTATCATTCAAAGAATGTTCCTAGTGCAAGTTTAGTTGGAGGTAATTCATTAGTTCATGGTCAGCACATAGATTGTGGTGGCAGCGCAATGGATCATGGCAATGGAGGAAACAGTCATAGTAACAACTCTAATCTCAACTCAAAACAACGTTTACGGTGGACGCATGAATTACATGAGCGCTTCGTTGATGCTGTGGCTCAACTTGGTGGGCCAGATCGTGCCACACCCAAAGGTGTCCTCAGAGTTATGGGTGTACAAGGCTTGACCATTTACCATGTCAAAAGCCATTTACAGAAGTACCGACTAGCAAAATATTTACCGGATTCCTCATCTGATGAAGGGAAAAAGGCTGACAAGAAAGAAACTGGGGATGTACTTTCGAATCTCGATGGTTCATCTGGGATGCAGATTACTGAAGCACTAAAGCTTCAAATGGAGGTGCAGAAGCGACTTCATGAACAATTGGAGGTGCAGAGACAGCTACAACTACGGATAGAAGCCCAGGGTAAATACCTGAAAAAGATAATTGAAGAACAACAGCGGCTCAGTGGAGTTCTTTCAGAGGCACCTGACACTGGGGTTGTGGCTGTGGTTCCAGGGGACGTGTGCCAAGAACCTGATAATAAGACCGACCCGTCTACACCTGACCCGGAAAAGGCTGCCAAGGACCGTGTCCCAGCAAAGAGTCTTTCAGGGGACTCTTTTTCATCACACCATGAACCATTGACACCAGATTCTGGATGCCATGTTGGTTCCCCTGCTGACAATCCTAAAGGGGAGAGATCAACCAAGAAGCAACGGCTAAACATGGACGGATCTTATTCTAAGCAAGACATGGCGCTTCCACTTCAGATACTGGAGTCAAGCATGTCATCATACCAACATCCTAACACTGTTTTTCTTGGGCAAGAGCAATTTGATCCTTCAATGGGTATGTCTGGCAGAAGTGGTGAGGAATTGGATAAGGTTGGTGGCAGTAATCTGTGA 990 0.4596 MYHSKNVPSASLVGGNSLVHGQHIDCGGSAMDHGNGGNSHSNNSNLNSKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDEGKKADKKETGDVLSNLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSGVLSEAPDTGVVAVVPGDVCQEPDNKTDPSTPDPEKAAKDRVPAKSLSGDSFSSHHEPLTPDSGCHVGSPADNPKGERSTKKQRLNMDGSYSKQDMALPLQILESSMSSYQHPNTVFLGQEQFDPSMGMSGRSGEELDKVGGSNL 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00975 329 MobiDBLite consensus disorder prediction 212 227 - -
Phco11g00975 329 MobiDBLite consensus disorder prediction 108 126 - -
Phco11g00975 329 Pfam MYB-CC type transfactor, LHEQLE motif 136 182 IPR025756 -
Phco11g00975 329 Gene3D - 48 107 - -
Phco11g00975 329 MobiDBLite consensus disorder prediction 305 329 - -
Phco11g00975 329 MobiDBLite consensus disorder prediction 201 277 - -
Phco11g00975 329 MobiDBLite consensus disorder prediction 108 132 - -
Phco11g00975 329 NCBIfam myb-like DNA-binding domain, SHAQKYF class 49 104 IPR006447 GO:0003677
Phco11g00975 329 SUPERFAMILY Homeodomain-like 48 103 IPR009057 -
Phco11g00975 329 Coils Coil 139 159 - -
Phco11g00975 329 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 43 317 IPR044848 GO:0003700
Phco11g00975 329 FunFam Myb family transcription factor 48 106 - -
Phco11g00975 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 106 IPR017930 -
Phco11g00975 329 Pfam Myb-like DNA-binding domain 52 102 IPR001005 -
Phco11g00975 329 MobiDBLite consensus disorder prediction 26 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00975 Phco-Chr11 7172037 7174168 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Phco11g00975 Myb_DNA-binding 2.2e-08 CL0123