Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00948 ATGGACTCAAAAACTACTTCTAGATCTCTCCCAAAACACCATCAGAAGACGGCTGGAATTCAAACCCTTGAGGCAAAAGACAACCGGTCTTCAGGGAATCCAGCTTCCCTGAAAACAGGGAAAACTGAGCTGACTGGTCCAGAGGATTTATCCAAGTCTGTGGGGAGCGGGTCCAAGCAGAATACTGGGGAAATTGCTGAAAACAAGAAGTTAGGAGTTTCAATCCAAAAGGGGACTGCTGATTCCCTGTGCAATAAAATTAGTTCTGGTGCTTCTTCATCTGTTTTTGACAAGTCTGATCAACCTGTTAATGAGAAAATAGGCTCACAGGAAAGCTCCATTGAACAAGACAAAAAGACATCGGATTATGGAAGTGTGAAAAACAGTTCTGTTTCTGCCAAAGTTAGTGATGGGGCCAGCAGTCTTGCAAAGACAAGTGGAAGTGCCAAGATTAGTGACAGAGCTGATTTTGTTGAAAGTGGTAAGAGCAGTATTTACAGAGGAAGCACAAGCAGTGATGTGAGTGATGAGAGTACTTGTAGTAGCTTTAGTAGCAGCATAAACAAACCTCACAAGGCAAATGACTTGAGATGGGAAGCCATTCAAGCCGTTCGCAGTAGAGATGGGGCGTTGGGTTTAGTTCACTTTAGACTACTGAAGAGGCTGGGTTGTGGGGATATAGGCAGTGTTTACCTCTCTGAGTTGAGTGGAACTAAATGTTACTTTGCAATGAAGGTAATGGACAAAGGGTCTCTAGCCAGTCGCAAAAAACTACTTCGTGCCCAGACAGAACGAGAAATCCTGCAGTCTCTTGACCACCCATTTCTCCCAACTTTGTACACCCATTTTGAGACTGAGAAATTCTCATGTTTGGTAATGGAATTCTGCCCAGGTGGTGACCTCCATACTCTTAGGCAGAAGCAACCAGGGAAGCATTTTCCTGAGCAGGCAGTAAAATTTTATGTAGCAGAGGTCCTTCTGGCATTAGAGTACCTCCACATGCTTGGGATTGTCTACCGTGACCTTAAGCCAGAAAATGTCCTTGTTAGGGACGACGGACATATTATGCTCTCTGACTTTGATCTTTCCCTCCGATGTGCTGTCAGTCCGACCCTTGTTAAAACTTCATCCACGGATTCTGAGCCTTTAAGAAAGAACTCTGCTTACTGTGTCCAACCTGCATGTATTGAGCCACCTTCCTGCATCCAACCATCCTGTGTTGCCCCTACCACATGCTTTTCACCCAGGCTCTTCTCTAGCAAATCAAAGAAAGACCGGAAGGCGAAAACTGAAATTGGCAACCAAGTGAGTCCATTACCTGAGCTGATTGCAGAGCCTACTGATGCTCGGTCCATGTCATTTGTTGGAACTCATGAATACTTGGCACCTGAGATTATTAAGGGTGAAGGTCATGGAAGTGCAGTTGATTGGTGGACCTTTGGGATCTTTCTATACGAGCTGTTGTTTGGTAAAACTCCCTTCAAAGGATCCGGTAACCGAGCCACACTGTTTAACGTTGTCGGACAGCCACTGCGATTTCCAGAAGCACCTGTTGTCAGTTTTGCAGCAAGGGATCTTATAAGGGGGTTGCTTGTGAAAGAACCTCAGCACAGATTGGCATACAAAAGAGGGGCAACTGAGATCAAGCAACACCCCTTTTTTGAAGGTGTGAACTGGGCATTGATCAGATGTGCTACCCCACCTGAGATCCCAAAGACTGTTGAGTTTGAGAAGATACCCTCCCCAGCCTCATCAGGTGCTGGTGAAAAGGCTGTTAACCACATGTCAATAGCTAATCAGAAAGGTTCTGATAATTATCTGGAGTTTGATTTCTTCTAG 1839 0.4519 MDSKTTSRSLPKHHQKTAGIQTLEAKDNRSSGNPASLKTGKTELTGPEDLSKSVGSGSKQNTGEIAENKKLGVSIQKGTADSLCNKISSGASSSVFDKSDQPVNEKIGSQESSIEQDKKTSDYGSVKNSSVSAKVSDGASSLAKTSGSAKISDRADFVESGKSSIYRGSTSSDVSDESTCSSFSSSINKPHKANDLRWEAIQAVRSRDGALGLVHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQKQPGKHFPEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLVKTSSTDSEPLRKNSAYCVQPACIEPPSCIQPSCVAPTTCFSPRLFSSKSKKDRKAKTEIGNQVSPLPELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPEAPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPKTVEFEKIPSPASSGAGEKAVNHMSIANQKGSDNYLEFDFF 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00948 612 MobiDBLite consensus disorder prediction 12 40 - -
Phco11g00948 612 Gene3D Transferase(Phosphotransferase) domain 1 300 375 - -
Phco11g00948 612 SUPERFAMILY Protein kinase-like (PK-like) 203 575 IPR011009 -
Phco11g00948 612 MobiDBLite consensus disorder prediction 90 130 - -
Phco11g00948 612 FunFam Serine/threonine-protein kinase AGC1-7 447 572 - -
Phco11g00948 612 MobiDBLite consensus disorder prediction 90 110 - -
Phco11g00948 612 PANTHER FLIPPASE KINASE 1-RELATED 64 578 - -
Phco11g00948 612 CDD STKc_phototropin_like 215 572 - -
Phco11g00948 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 337 349 IPR008271 GO:0004672|GO:0006468
Phco11g00948 612 ProSiteProfiles Protein kinase domain profile. 216 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00948 612 FunFam serine/threonine-protein kinase D6PK-like 300 367 - -
Phco11g00948 612 MobiDBLite consensus disorder prediction 49 67 - -
Phco11g00948 612 FunFam Serine/threonine-protein kinase D6PK-like 214 299 - -
Phco11g00948 612 Gene3D Phosphorylase Kinase; domain 1 215 299 - -
Phco11g00948 612 SMART serkin_6 216 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00948 612 MobiDBLite consensus disorder prediction 1 72 - -
Phco11g00948 612 Gene3D Transferase(Phosphotransferase) domain 1 448 572 - -
Phco11g00948 612 Pfam Protein kinase domain 217 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00948 612 Pfam Protein kinase domain 451 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00948 Phco-Chr11 6986964 6989751 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Phco11g00948 Pkinase 1.6e-36 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00948 11 6986964 6989751 Phco11g00948 11 6986964 6989751 ECH