Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00919 ATGGCTGAGTCTGATAACGATTCAGGAGGGCAAGCCGGTAACACAAGTGGAGGCAATGAATTCTCAGGGTGCAGAGAGCAAGACAGGTTCCTTCCCATAGCCAACGTGAGCAGGATCATGAAGAAGGCGTTGCCGGCGAACGCGAAGATCTCGAAGGAGGCGAAGGAAACCGTGCAAGAGTGTGTGTCGGAGTTCATCAGCTTCATAACAGGTGAAGCATCTGATAAGTGCCAGAAGGAGAAGAGAAAAACTATCAACGGCGATGACCTACTGTGGGCCATGACCACACTGGGATTTGAGGAGTATGTGGAGCCTCTCAAGATTTACCTGCACAAGTATAGGGAGATGGAGGGGGAGAGAACTGCTATGATGGGAAGGCCACTGGGTGGGGGTGGGGGTGGTGGTGGTGGTGGTGATGATCAGAGGAATGAGGCTTATGGCCATGCTCATGGCCATGGAGGTATGGTACCAAACTCTATGATGGTGATGATGGGGCATCAGGGACACGTGTATGGATCTGGGAGTGCTGGATCAGCATCTTCTGCAAGAACTAGATAG 558 0.5197 MAESDNDSGGQAGNTSGGNEFSGCREQDRFLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEEYVEPLKIYLHKYREMEGERTAMMGRPLGGGGGGGGGGDDQRNEAYGHAHGHGGMVPNSMMVMMGHQGHVYGSGSAGSASSARTR 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00919 185 SUPERFAMILY Histone-fold 27 127 IPR009072 GO:0046982
Phco11g00919 185 MobiDBLite consensus disorder prediction 1 22 - -
Phco11g00919 185 Gene3D Histone, subunit A 19 131 IPR009072 GO:0046982
Phco11g00919 185 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Phco11g00919 185 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Phco11g00919 185 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Phco11g00919 185 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Phco11g00919 185 FunFam Nuclear transcription factor Y subunit B-3 19 141 - -
Phco11g00919 185 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 7 143 IPR027113 GO:0001228|GO:0006355|GO:0016602
Phco11g00919 185 MobiDBLite consensus disorder prediction 1 24 - -
Phco11g00919 185 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00919 Phco-Chr11 6791950 6792507 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Phco11g00919 CBFD_NFYB_HMF 1.4e-27 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00919 11 6791950 6792507 Phco11g00919 11 6791950 6792507 ECH
Phco8g02428 8 27222450 27222848 Phco11g00919 11 6791950 6792507 PCT