Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00908 ATGACATCCATACCTTCTAAAAACCTATGTGTTCGGAGGCAACAATGCCCTTGTGGAGATTGGAAGTGTTATATTACATATGAGGGTGATTCTGAAGAGGGTTTTGCGGCACCTGAATTGGTGAAGGAAGAGAGAGCATCTTCTGGGGCTTTGATTACTCCCTATGTTGGAATGGTATTTAAGAGTGATGATGATGCTTTTGAGTATTATGGCAATTTTGCTAGGAAGAATGGGTTCTCTATTAGGAAGGAAAGGTCTAGAATTAGCCCCCAGTTGGGGATTTACAAGCGTGACTTCGTTTGTTACCGGTCCGGCTTTGCCCCGGTGAAGAAGAAGCCTAATGGAGAACACCATAGAGATAGGAAATCAGTGAGGTGTGGATGTGATGCAAAGATGTATCTATCCAAGGAGGTTGTAGAAGGGGTTTCCCAGTGGTTTGTTGTGCAGTTTAGTAATGTGCACAATCATGAACTTTTGGAAGATGATCAAGTGCGTCTTTTGCCCGCATATCGGAAAATTCACGAGGCTGATCAAGAGCGTATACTCTTGCTCTCCAAGGCAGGGTTTCCAATTCATCGGATAGTGAAAATGCTTGAGCAGGAAAAGGGAATTCAAGGGGGCCAGCTGCCTTTCTTGGAAAGGGATGTGAGGAACTTTGTTCAAAACCGCAAGAAGGTTGTTCTAGAGAATGAGGCATTGCTCAGTGAGAAAAGAGAAAATGATGTATTGGAACTTCTTGAGGCGTGCAAAGTGATGAAAGAAGCAGATAATGAGTTTGTGTACGATTTTACTGTGGATGGGAATGATAAGGTTGAAAATGTAGCTTGGTCATACGGCGACTCAGTTAATGCAAATGCTATGTTTGGTGATGTGGTTTATTTTGACACTTCTTATAGATCGGTCACTTATGGATTGCTTTTTGGAGTATGGTTTGGTATTGATAGCTACGGCAGAACTATTTTTTATGGTTGTGTTTTATTGCAGGATGAAACACCTCAATCCTTCTCGTGGGCATTACAGACTTTTGTCAGGTTCATGAGAGGAAGATGTCCACAAACTATTCTAACTGATCTAGACCCGGGACTTAGAGATGCAATTATAGGTCAATTTCCAGGAACTAAACATGTTGTTCCTCAGTGGAATATTCTACACAAGGTACCCTGTTGGTTTTCTCCTACTCTGGGTTCTCGGTATGCAGAATTTAAATCTGAGTTCGATGCCTTATTTCACATTGAGAATACAGAGGAATTTGAACTTCAGTGGAGCCCGATGATTTCTGTGTTTGGACTTGGTTCAGATAAACATGCTGAGTTACTATATTCTGTTCGAGAATCCTGGGCCCAAGCCTATGTAAGAGGTTACTTTCTGGCTCGAATGGCGACAATGGCTTACTCAAAGTCTACAGATGCATTTTTGAAAAGGATTTTCTCTGCTCATACGTGTTTGCGTAGCTTCTTTGAGCAGGTTGGCATTTCTGCAAGTTTTCAACATCAAGCACTTAAGGAGACTCAATATATTCAGCTCAAAACTTGCATACCGATTGAAGAGCATGCACGGAGTATTCTCACTCCTTTTGCTTTTAATGCCTTGCAGCAAGAGCTGTTGTTGGCCATGCAATATGCTGCATCCGAAATGGCCAATGGATCATATATTGTGCGGCATTTCAAAAGGATGAACGGAGAACGGCTTGTAATATGGTTGGTTGAAGATGATCAGATACACTGCTCTTGCAAGGAGTTTGAATCCTCAGGAATACTATGCAGGCATGCTCTTCGTGTATTAGTAATAAAAAACTATTTTCAGTTACCTGATAAATACTTTTTGGGTAGATGGAGACGGGAATGCTCATTACTTGTTGATGATGATGACAATAATCAAGGTATTGGAGGGGAATGGTATCAAGAATATCAGTCCCTAGCGGAAACTTTATTTCAAGAATCATCAATTACAAAGGAGCGATCTGACTATGTGCGTAAAGAACTGACAAAAGAACTTACTAGGATTCTTAATGAGGTTAGAAATCTCCCTGAGGCTGATGGAGTCTGCATGAACATGTTAGTCTCACCAGCCAACTAG 2076 0.4143 MTSIPSKNLCVRRQQCPCGDWKCYITYEGDSEEGFAAPELVKEERASSGALITPYVGMVFKSDDDAFEYYGNFARKNGFSIRKERSRISPQLGIYKRDFVCYRSGFAPVKKKPNGEHHRDRKSVRCGCDAKMYLSKEVVEGVSQWFVVQFSNVHNHELLEDDQVRLLPAYRKIHEADQERILLLSKAGFPIHRIVKMLEQEKGIQGGQLPFLERDVRNFVQNRKKVVLENEALLSEKRENDVLELLEACKVMKEADNEFVYDFTVDGNDKVENVAWSYGDSVNANAMFGDVVYFDTSYRSVTYGLLFGVWFGIDSYGRTIFYGCVLLQDETPQSFSWALQTFVRFMRGRCPQTILTDLDPGLRDAIIGQFPGTKHVVPQWNILHKVPCWFSPTLGSRYAEFKSEFDALFHIENTEEFELQWSPMISVFGLGSDKHAELLYSVRESWAQAYVRGYFLARMATMAYSKSTDAFLKRIFSAHTCLRSFFEQVGISASFQHQALKETQYIQLKTCIPIEEHARSILTPFAFNALQQELLLAMQYAASEMANGSYIVRHFKRMNGERLVIWLVEDDQIHCSCKEFESSGILCRHALRVLVIKNYFQLPDKYFLGRWRRECSLLVDDDDNNQGIGGEWYQEYQSLAETLFQESSITKERSDYVRKELTKELTRILNEVRNLPEADGVCMNMLVSPAN 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00908 691 Pfam SWIM zinc finger 569 594 IPR007527 GO:0008270
Phco11g00908 691 ProSiteProfiles Zinc finger SWIM-type profile. 563 598 IPR007527 GO:0008270
Phco11g00908 691 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 52 656 IPR031052 GO:0006355
Phco11g00908 691 SMART 26again6 573 600 IPR006564 GO:0008270
Phco11g00908 691 Pfam FAR1 DNA-binding domain 68 159 IPR004330 -
Phco11g00908 691 Pfam MULE transposase domain 291 384 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00908 Phco-Chr11 6730341 6732586 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Phco11g00908 MULE 1.6e-13 CL0219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00908 11 6730341 6732586 Phco11g00908 11 6730341 6732586 ECH