Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00903 ATGGGTCGTTCTCGTGGGAATTTTCATCACGCCGATGAGGATCCCAATCAGAGATCAAGGAGAAAAAAGAATGCCGCAAGTGGAGAAAACTCCGAATCTGGAGTTGCAGGTCAAGGAGCAGGTGAAGGGAAAAAGGCTTTGTACCACTGCAATTATTGTAATAAAGATATAACTGGAAAAATCCGTATTAAGTGCGCCATGTGCCCAGATTTTGACTTGTGTATAGAGTGCTTTTCTGTTGGAGCTGAGGTGACACCTCACAAAAGCAACCATCCTTACAGGGTTATGGATAATTTGTCTTTCCCTCTTATTTGCCCAGACTGGAATGCAGATGATGAAATTTTGCTTCTTGAGGGAATTGAAATGTATGGCTTGGGAAACTGGACAGAAGTCGCTGAGCATGTTGGAACCAAAAACAAAGAATCATGCATAGAACACTATAAGAACATATACCTGAGCTCCCCATTCTTTCCTGTTCCGGACATGTCTCATGTGGTTGGTAAAAACAGAAAAGAACTTCTTGCCATGGCAAAGGGGCAGGGTGAAGACAAGAAAGGAATTTCCATGGGGGATCTTAGTTTAAAGGCAGAATCTCCCTTCTCTCCATCTAGAGCCAAGGTTGAAGATTCACATAAAGCTGGCTCTGCTAATCGTTTGTCTTCCAATTTGAATTCAGAGTTAGATTCTGGTCCCTCAGGTAACACACACTCTGCAGCTGGTGCTAACCAAAAGGCATCTCATGTGGCCAGGGGAAAAGGTGGTCCTCCTGGAGTCATTAAAATGGAAGATTCTCAGATAGACAGAGATTTTGGAGGAAAGAAGCCAACTTCCTCAGGAAATGAAGGTCCTTCTTTAGTAGAATTGAGTGGTTACAATGCTAAAAGACAAGAATTCGATCCTGAATATGATAATGATGCTGAACAACTACTTGCTGAAATGGAGTTTAAGGATACCGATTCTGAGGATGAGCGAGAGTTGAAACTTCGTGTATTGCGTCTATATTCAAAGAGGCTTGATGAAAGAAAGCGGAGGAAGGATTTCATACTTGAAAGAAATTTGTTATACCCAAATCCATTGGAGAAGGATTTAACACCTGAGGAGAAGGCAATATGTCGAAAATATGATATATTCATGCGCTTTCATTCTAAAGAAGATCACGATGAATTGCTTAGAACAATGCTCTTTGAGCATAGAAGTTGGAAAAAAATTCAAGAGCTTAAGGAAGCCCGGGTAGCTGGTTGCCGCAATTCAGCTGAAGCTGATAGATATATCTCATCCAAGAGAAAGAGGGAAGCTGAAGAAAATGCTCGAAGGACAAGGACAAAAGAAAGTGCTCAAGTTGGCCCTAGCAATCAGGGAATTCCAAATGCATTGACTTCTCCAGATTCAGCTGGTAAGGATACAAGTGCAAGACCTGCAGGGCCAGCTACTTCTAGTTCTGTCAATGAGATGGATGTGATAGGATACTATGGAGCAGATTTACTTTGTGAAGCTGAGAAACGATTGTGCTGTGAGTTAAGATTGTCTCCAGCCATGTATCTAAAAATGCAAGAGCAACTGTCACTACAAATACTTGCTGGCACTGTCTCTGCAAAATCTGACGCTCATCAATTATTCAAGTTGGATGCCATAAAAATTGACAGGGTGTATGATATGCTCATTAAAAAGGGGATCGGTTTACCTTGA 1686 0.417 MGRSRGNFHHADEDPNQRSRRKKNAASGENSESGVAGQGAGEGKKALYHCNYCNKDITGKIRIKCAMCPDFDLCIECFSVGAEVTPHKSNHPYRVMDNLSFPLICPDWNADDEILLLEGIEMYGLGNWTEVAEHVGTKNKESCIEHYKNIYLSSPFFPVPDMSHVVGKNRKELLAMAKGQGEDKKGISMGDLSLKAESPFSPSRAKVEDSHKAGSANRLSSNLNSELDSGPSGNTHSAAGANQKASHVARGKGGPPGVIKMEDSQIDRDFGGKKPTSSGNEGPSLVELSGYNAKRQEFDPEYDNDAEQLLAEMEFKDTDSEDERELKLRVLRLYSKRLDERKRRKDFILERNLLYPNPLEKDLTPEEKAICRKYDIFMRFHSKEDHDELLRTMLFEHRSWKKIQELKEARVAGCRNSAEADRYISSKRKREAEENARRTRTKESAQVGPSNQGIPNALTSPDSAGKDTSARPAGPATSSSVNEMDVIGYYGADLLCEAEKRLCCELRLSPAMYLKMQEQLSLQILAGTVSAKSDAHQLFKLDAIKIDRVYDMLIKKGIGLP 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00903 561 Gene3D - 102 153 - -
Phco11g00903 561 SUPERFAMILY RING/U-box 48 110 - -
Phco11g00903 561 CDD SANT 108 150 IPR001005 -
Phco11g00903 561 ProSiteProfiles Zinc finger ZZ-type profile. 45 101 IPR000433 GO:0008270
Phco11g00903 561 SMART zz_5 44 89 IPR000433 GO:0008270
Phco11g00903 561 PIRSF Txn_adaptor_ADA2 35 560 IPR016827 GO:0003713|GO:0006357|GO:0035065
Phco11g00903 561 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 155 IPR017930 -
Phco11g00903 561 CDD ZZ_ADA2 48 96 IPR041983 -
Phco11g00903 561 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 48 556 - -
Phco11g00903 561 Pfam Myb-like DNA-binding domain 107 150 IPR001005 -
Phco11g00903 561 SMART sant 104 153 IPR001005 -
Phco11g00903 561 MobiDBLite consensus disorder prediction 267 286 - -
Phco11g00903 561 FunFam Transcriptional adapter 2 101 153 - -
Phco11g00903 561 MobiDBLite consensus disorder prediction 214 242 - -
Phco11g00903 561 FunFam Transcriptional adapter 41 96 - -
Phco11g00903 561 ProSiteProfiles SANT domain profile. 103 155 IPR017884 -
Phco11g00903 561 MobiDBLite consensus disorder prediction 1 27 - -
Phco11g00903 561 MobiDBLite consensus disorder prediction 442 479 - -
Phco11g00903 561 ProSiteProfiles Myb-like domain profile. 108 151 IPR001005 -
Phco11g00903 561 Pfam Zinc finger, ZZ type 46 88 IPR000433 GO:0008270
Phco11g00903 561 FunFam Transcriptional adapter 2 476 559 - -
Phco11g00903 561 MobiDBLite consensus disorder prediction 1 41 - -
Phco11g00903 561 MobiDBLite consensus disorder prediction 425 479 - -
Phco11g00903 561 SUPERFAMILY Homeodomain-like 101 154 IPR009057 -
Phco11g00903 561 MobiDBLite consensus disorder prediction 425 441 - -
Phco11g00903 561 SUPERFAMILY Homeodomain-like 468 558 IPR009057 -
Phco11g00903 561 ProSitePatterns Zinc finger ZZ-type signature. 50 77 IPR000433 GO:0008270
Phco11g00903 561 Gene3D - 476 559 IPR036388 -
Phco11g00903 561 Gene3D - 41 96 IPR043145 -
Phco11g00903 561 ProSiteProfiles SWIRM domain profile. 475 561 IPR007526 GO:0005515
Phco11g00903 561 MobiDBLite consensus disorder prediction 193 262 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Phco11g00903 Myb_DNA-binding 6e-11 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00903 11 6696545 6701242 Phco11g00903 11 6696545 6701242 ECH