Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00894 ATGCAAACGTCCCAGAAACACCCAACTTCATCCGGTATCCATTTATACCACCAGCCTGTGCAAGACATCGATCCCTACACTCCTTACCAAGTACTGCAAAGCAATTCTTGCCATGAAATCCATGATAGCAGCAGTCAGGGAACCACTATTTCGTTTGAGCCCTGCAAGGAGCAATACTTTACCCTTGAATCATCCCCTCCAATCAATGATCTCATAGGTTGTGATTCTCCTTCCTATGCTAGTGTATCGTCCAATTCCAATAGAAGTCCTTTTTCTCCACATGCTTCTCATTCATACCATTCAGATCAGCATCAGTCCTCCGACAACAACTATGGATCACCAACAAGTGCACACTCTAGTGCTGATGAGAGCTATGAATTGAAGCACAAGCTTAGAGAACTCGAGATTTCATTGTTGGGGCCTGATTCAGATATTGTTGACAGTTGTCAGTGTTGCTACAAGGGAAGCCACCACGGAGCATCTCCAATGGATAAGTATAATTGGGATCAGATTGTAGATATGATTCCAAAACTAGACTTGAAAGAAGTCCTCAGTCGGTGTGCACAGGCTGTATCTGATGATGATATTGAAACAGCGGTGGGATTTATGAATAAAGTATTGCCAAAGATGGTATCAGTAGGGGGTGATCCAATCCAGAGGTTAGGGGCCTACATGTTGGAGGGTCTAAGAGCAAGGTTGGAGTCTTCAGGGAGCCTAATCTACAAAGCCTTGAAATGTGAACAACCAGCAAGCAAAGATCTCATGAGTTACATGCACATCCTGTACCAGATTTGCCCATATTGGAAGTTTGCTTACGTATCTGCCAATGCTGTCATTGGAGAAGCAATGCTAAATGAATCAAGAATTCATATAATTGACTTCCAAATTGCACAGGGCACTCAGTGGATGCTGCTTATTCAGGCTCTTGCATCTCGTCCAGGTGGACCACCTTTCATTCGTGTAACTGGTGTCGATGATTCCGAATCCTTTCATGCAAGAGGTGGAGGACTTGAAATTGTAGGAAAACGCCTCTCAGATTATGCCACATCTTGTGGAGTGCCATTTGAGTTCCACAGTGCTGCAATGTCTGGATGCGAGGTTGAACTAGAAAACCTTGTAGTTCGTCCCGGGGAAGCTCTGGCCGTGAATTTCCCTTTTGCTTTGCACCACATGCCAGATGAGAGTGTGAGCACAGAGAACCACAGGGACAGGCTATTAAGACTGGTGAAGAGCTTGTCACCCAAGGTTGTGACCCTTGTTGAGCAAGAATCCAACACCAACACTTCCCCCTTTTACCAAAGGTTTGTTGAGACCTTGAGTTATTACACTGCTATGTTTGAGTCAATAGACGTGGCCCTCCCCAGAGAGGATAAGCAAAGGATCAGTGCAGAACAACACTGTGTGGCTCGTGACATTGTTAACATGATAGCTTGTGAGGGGCCTGAGAGGGTGGAAAGGCATGAACTGTTCGGGAAATGGAGGTCAAGATTTTCAATGGCTGGTTTTGCACCATGCCCTTTGAGTTCCTCAGTCACTAATGCAGTTAGAAATATGTTAAGAGAATTCAATGGAAACTATAGGCTAGAACATAGAGATGATGCACTCTATCTAGGATGGAAGAGAAGAACCATGTGTACATCTTCTGCTTGGAGATGTTACTGA 1662 0.4471 MQTSQKHPTSSGIHLYHQPVQDIDPYTPYQVLQSNSCHEIHDSSSQGTTISFEPCKEQYFTLESSPPINDLIGCDSPSYASVSSNSNRSPFSPHASHSYHSDQHQSSDNNYGSPTSAHSSADESYELKHKLRELEISLLGPDSDIVDSCQCCYKGSHHGASPMDKYNWDQIVDMIPKLDLKEVLSRCAQAVSDDDIETAVGFMNKVLPKMVSVGGDPIQRLGAYMLEGLRARLESSGSLIYKALKCEQPASKDLMSYMHILYQICPYWKFAYVSANAVIGEAMLNESRIHIIDFQIAQGTQWMLLIQALASRPGGPPFIRVTGVDDSESFHARGGGLEIVGKRLSDYATSCGVPFEFHSAAMSGCEVELENLVVRPGEALAVNFPFALHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFYQRFVETLSYYTAMFESIDVALPREDKQRISAEQHCVARDIVNMIACEGPERVERHELFGKWRSRFSMAGFAPCPLSSSVTNAVRNMLREFNGNYRLEHRDDALYLGWKRRTMCTSSAWRCY 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00894 553 Pfam GRAS domain family 181 551 IPR005202 -
Phco11g00894 553 ProSiteProfiles GRAS family profile. 171 551 IPR005202 -
Phco11g00894 553 MobiDBLite consensus disorder prediction 83 124 - -
Phco11g00894 553 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 115 544 IPR005202 -
Phco11g00894 553 MobiDBLite consensus disorder prediction 83 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00894 Phco-Chr11 6644351 6646012 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Phco11g00894 GRAS 1.6e-128 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00894 11 6644351 6646012 Phco11g00894 11 6644351 6646012 ECH
Phco8g02451 8 27989188 27990837 Phco11g00894 11 6644351 6646012 PCT