Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00869 ATGTTTGGAAATCAACACTCGTTGGAGCTCATGACTGTATGTTCTGACAATCTTCATATCATTTTTCACAAACACACTTGTTTTCTAGATTCAATGGCGGGTTCATGTTTCCACGGACTGAGGCTAAGGATGTCTAAGAGTAAACCTTTACTTTCATCTTCCTCCAAGTCACGGTTGGAGAATGACACGGAGAACATGGAAAGGAATAGATTTAATAGCACGGAATCGTGGTCCATGATATTGGACTCAATGGATACATGGGAGGCTTCAAAGGAAGACCAGGAGGGGGAGCAAGAGGAATGGACTGCAGACCTATCACAGCTTTTTATTGGTAACAAGTTTGCTTCTGGAGCTCACAGTCGAATTTACCGTGGAGTCTACAAGCAGAGAGCCGTTGCTGTGAAAATGGTGAGGATTCCAATCCAGGATGAGGAGAAAAAGGACTTACTAGAGGAGCAATTTAACTCTGAAGTGGCTTTACTTTCACGTCTCTTCCATTTTAACATAGTGCAGTTTATTGCAGCATGCAAAAAACCGCCCGTGTACTGTATCATAACAGAATACATGTCACAAGGGAATCTGAGGATGTATCTGAACAAGAAAGAGCCATACTCACTCTCAATGGAAACAATACTAAGGTTGGCTCTAGATATATCAAGGGGCATGGAGTACCTTCATTCACAAGGTGTGATTCACAGAGACTTGAAGTCAAGTAATTTGCTCCTGGATGATGATATGAGGGTTAAGGTGGCGGATTTTGGCACATCTTGTCTTGAAACAAGATGCCGGAAAAGCAAAGGGAACTCGGGAACATATCGTTGGATGGCACCAGAGATGATTAAGGAAAAACCTTACACCCGAAAAGTTGATGTGTACGGTTTTGGTATTGTGCTTTGGGAGCTCACTACTTCTCTACTTCCTTTCCAAGGAATGACCCCAGTGCAAGCTGCTTTTGCTGTGGCTGAGAAGAATGAAAGGCCTCCTCTGCCAGCTAGTTGTGAACCAGCAGTAGCACATCTGATAAAGCGTTGTTGGTCAGCAAACCCCTCGAAACGGCCAGATTTCAGTGATATTGTGTCTACTTTGGAGAAATACGATGAGTGTCTGAAGGAGGGCCTACCAATGAGCCATCATCATTCAGGTCTAGTCACCAGAAATGTAATCGTTGAACGCCTAAAAGGCTGTGTATCATTGAGCTCCTCCATACCTGTGTATGCTTGA 1221 0.4373 MFGNQHSLELMTVCSDNLHIIFHKHTCFLDSMAGSCFHGLRLRMSKSKPLLSSSSKSRLENDTENMERNRFNSTESWSMILDSMDTWEASKEDQEGEQEEWTADLSQLFIGNKFASGAHSRIYRGVYKQRAVAVKMVRIPIQDEEKKDLLEEQFNSEVALLSRLFHFNIVQFIAACKKPPVYCIITEYMSQGNLRMYLNKKEPYSLSMETILRLALDISRGMEYLHSQGVIHRDLKSSNLLLDDDMRVKVADFGTSCLETRCRKSKGNSGTYRWMAPEMIKEKPYTRKVDVYGFGIVLWELTTSLLPFQGMTPVQAAFAVAEKNERPPLPASCEPAVAHLIKRCWSANPSKRPDFSDIVSTLEKYDECLKEGLPMSHHHSGLVTRNVIVERLKGCVSLSSSIPVYA 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00869 406 Gene3D Phosphorylase Kinase; domain 1 97 190 - -
Phco11g00869 406 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 101 365 - -
Phco11g00869 406 Pfam Protein tyrosine and serine/threonine kinase 110 362 IPR001245 GO:0004672|GO:0006468
Phco11g00869 406 Gene3D Transferase(Phosphotransferase) domain 1 191 386 - -
Phco11g00869 406 ProSiteProfiles Protein kinase domain profile. 108 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00869 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
Phco11g00869 406 FunFam Serine/threonine-protein kinase isoform 1 98 190 - -
Phco11g00869 406 SUPERFAMILY Protein kinase-like (PK-like) 85 362 IPR011009 -
Phco11g00869 406 CDD STKc_MAP3K-like 115 362 - -
Phco11g00869 406 FunFam serine/threonine-protein kinase HT1 191 384 - -
Phco11g00869 406 PRINTS Tyrosine kinase catalytic domain signature 270 280 IPR001245 GO:0004672|GO:0006468
Phco11g00869 406 PRINTS Tyrosine kinase catalytic domain signature 289 311 IPR001245 GO:0004672|GO:0006468
Phco11g00869 406 PRINTS Tyrosine kinase catalytic domain signature 186 199 IPR001245 GO:0004672|GO:0006468
Phco11g00869 406 PRINTS Tyrosine kinase catalytic domain signature 224 242 IPR001245 GO:0004672|GO:0006468
Phco11g00869 406 PRINTS Tyrosine kinase catalytic domain signature 333 355 IPR001245 GO:0004672|GO:0006468
Phco11g00869 406 SMART serkin_6 108 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00869 Phco-Chr11 6427085 6431324 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Phco11g00869 PK_Tyr_Ser-Thr 7e-66 CL0016