Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00850 ATGGAAGGTAGTAGTAGTTCTAATGGCACTTCTTATTTGTTGGCTTTTGGAGAAAACAGTGGTGGGCTATGCCCAATGACGATGATGCCTTTGGTGACTTCCCATCATGCTGGTCATCATCCAATAAATCCTAATCCTAGTAATAATACCAATAATAATGCAAACACAAACTGTCTCTTCATTCCCAACTGCAGTAACAGTGGAACTCCTTCTATAATGCTCGACAATAACCACAACAACAACAACGATGATAACAACACCACTGGGGTAGGGTACTATTTCATGGAGAGTGCCCATCACAACCACCGCAACAACAACAATGGAAGCTCCTCCTCTTCTTCCTCTTCTGCTGTCAAGGCCAAGATCATGGCCCATCCTCACTATCACCGTCTCTTGGCAGCTTACGTCAACTGTCAGAAGGTTGGAGCCCCGCCTGAAATGGTTGCCAGGTTAGAGGAATCATGTGCTTCTGCGGTGACAATGGTAGGAGATGCAGCTGGATCCAGCTGCTTAGGTGAAGATCCAGCTCTGGATCAGTTCATGGAAGCTTACTGCGAGATGCTGACCAAGTACGAGCAAGAACTCTCCAAACCCTTAAAAGAAGCCATGCTCTTCCTTCAAAGGATTGAGTGTCAGTTCAAAAATCTTACTATTTCTTCCTCCGACTTCGGTTGTAATGAAGGTGGTGATAGGAATGGATCATCTGAAGAGGATGTTGATGTACAGAGCATGATAGATCCCCAGGCAGAGGACAGGGAATTAAAGGGTCAGCTTCTGCGCAAGTACAGTGGATACTTGGGCAGTCTGAAGCAGGAGTTCATGAAAAAGAGGAAAAAAGGAAAGCTACCTAAAGAAGCAAGGCAACAATTGCTTGAATGGTGGAGCAGACATTACAAATGGCCTTATCCATCCGAATCACAGAAGCTGGCTCTTGCTGAGTCCACAGGTCTGGATCAGAAGCAAATCAACAACTGGTTTATTAATCAAAGGAAACGGCACTGGAAGCCTTCAGAGGACATGCAGTTTGTGGTGATGGATCCAACCCATCCACACTATTACGTAGATACTGTTCTGGCCAATCCATTTCCCATGGATCTCTCCCATCCCATGCTCTAG 1116 0.4561 MEGSSSSNGTSYLLAFGENSGGLCPMTMMPLVTSHHAGHHPINPNPSNNTNNNANTNCLFIPNCSNSGTPSIMLDNNHNNNNDDNNTTGVGYYFMESAHHNHRNNNNGSSSSSSSSAVKAKIMAHPHYHRLLAAYVNCQKVGAPPEMVARLEESCASAVTMVGDAAGSSCLGEDPALDQFMEAYCEMLTKYEQELSKPLKEAMLFLQRIECQFKNLTISSSDFGCNEGGDRNGSSEEDVDVQSMIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDPTHPHYYVDTVLANPFPMDLSHPML 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00850 371 SMART KNOX1_2 116 160 IPR005540 GO:0003677|GO:0005634
Phco11g00850 371 SMART KNOX2_2 167 218 IPR005541 GO:0003677|GO:0005634
Phco11g00850 371 Gene3D - 278 340 - -
Phco11g00850 371 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 93 342 - -
Phco11g00850 371 ProSiteProfiles 'Homeobox' domain profile. 273 336 IPR001356 GO:0003677
Phco11g00850 371 SMART HOX_1 275 340 IPR001356 GO:0003677
Phco11g00850 371 FunFam Homeobox protein knotted-1-like 2 278 340 - -
Phco11g00850 371 CDD homeodomain 285 337 IPR001356 GO:0003677
Phco11g00850 371 SMART ELK_2 253 274 IPR005539 GO:0003677
Phco11g00850 371 MobiDBLite consensus disorder prediction 99 118 - -
Phco11g00850 371 SUPERFAMILY Homeodomain-like 275 350 IPR009057 -
Phco11g00850 371 Pfam ELK domain 253 274 IPR005539 GO:0003677
Phco11g00850 371 ProSitePatterns 'Homeobox' domain signature. 311 334 IPR017970 GO:0000981|GO:0006355
Phco11g00850 371 ProSiteProfiles ELK domain profile. 253 273 IPR005539 GO:0003677
Phco11g00850 371 Pfam Homeobox KN domain 293 332 IPR008422 GO:0003677|GO:0006355
Phco11g00850 371 Pfam KNOX2 domain 171 217 IPR005541 GO:0003677|GO:0005634
Phco11g00850 371 Pfam KNOX1 domain 117 156 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00850 Phco-Chr11 6224607 6230054 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Phco11g00850 KNOX2 6.9e-21 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00850 11 6224607 6230054 Phco11g00850 11 6224607 6230054 ECH
Phco8g02492 8 28861783 28867246 Phco11g00850 11 6224607 6230054 PCT