Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00847 ATGCCTGCCCCTCCTTCCCCTCTTTCTCCCTCCCTCGCTTTCATCTTCCTTGCTCTGCTTCCTCTTTCCCTTGCCAACACTGACCCTTCTGATGTTCAAGCTCTCGAGGTTATGTACAATGCGTTGAATAGTCCAACTCAGTTAACGGGTTGGAGAATTGGTGGTGGTGATCCATGTGGAGAGTCATGGAAAGGGGTAACGTGTGAAGGTTCAGCCGTTGTTTCCATTGAGCTCTCAGGATTAGGACTCGATGGGACTCTGGGGTACCTGCTTTCGAACCTTATGTCACTCAGAAAGCTTGACTTAAGTGACAACAAGATCCATGATACAATACCTTACCAGTTGCCGCCAAATCTTACAAGCCTGAATCTTGCAAGAAATAATTTATCTGGAAATCTTCCTTATTCCTTTTCTGCCATGGTTTCTCTCAATTATTTGAATTTAAGCAATAATGCACTCTCCATGACAGTTGGCGATGTTTTTGCTAGTCTTTCAGATCTTGGTATCCTGGATCTATCATTCAATAACTTCTCCGGGGATCTTCCTCCTTCATTTGGTGCATTGACCAATCTTTCTTCTCTTTTCTTGCAGAAAAACCAGATGACTGGCTCTCTTAGTGTTCTCGTTGGTTTGCCTTTGGATACTTTAAATGTTGCAAACAATAATTTTAGTGGATGGATACCTCATGAGATTAGTTCCATACATCGTTTCATATATGATGGAAATTCATTTGAGAACACTCCTGCTCCTCTTCCACCGGCATTAACTTTACCTCCTCCCAGTGGATCTCACAGTCATCATCATTCTGGATCTGGTTCACACAATACAACAGAAGCCTCTGATAATGAAAATTCCGATGGCCATACGGGTTTGACAGTGGGGGCTGTTGTGGGCATTGTGTTAGGTTCAGTAGTGGTGGCTGCTATTGTGCTGTTTGCTCTTGTTTTCTTCATCCAAAAGCGAAAGGGGAAGAAAACAGGTCCAAGGAATTTTAGTGGGAGCCTTCCTCATGGAGTTATTAATGTAACTCCTCAGATGCAAGAGCAGAGGGTAAAAAGCGCTGCTGTAGTTACAGATCTCAAGCCTCGTCAAGCAGAAAATGTATCAGTTGAGAGATTACCTGCAAAAAGTGGATCTGTGAGGCACATGAAGTCCCCTATAACTTCAACATCGTACACAGTTGCTTCTCTCCAAAGTGCAACAAATAGCTTTAGTCAAGAATTTATAATTGGTGAAGGTTCTCTTGGCCGAGTTTACAAGGCTGATTTCCCAAATGGAAAGGAAATGGCTATCAAGAAGATCGACAACTCAGCACTGTCGTTACAGGAGGAAGACAATTTTCTTGAAGCTGTTTCAAATATGTCACGCCTGCGGCACCCAAATATTGTGACATTGACTGGATATTGTGCTGAGCATGGCCAACGACTTCTAGTTTACGAGTATATTGGGAATGGAAATCTGCATGACATGCTCCATTTTGCTGAAGATAGCAGTGGCAAGGCTTTGTCTTGGAATGCTCGTGTACGCATAGCACTTGGCACAGCCCGGGCTTTAGAGTACTTGCATGAAGTGTGCCTGCCTTCTGTTGTACATAGAAATTTCAAATCAGCAAATATATTACTTGATGAGGAGCTAAATCCTCACCTGTCTGACTGTGGTTTAGCTGCTTTGACACCAAACACAGAGAGGCAGGTATCAACTCAGATGGTCGGTTCATTTGGTTACAGTGCCCCTGAGTTTGCATTATCAGGAGTATACACTGTAAAAAGTGATGTTTACAGCTTTGGAGTGGTTATGCTGGAATTGTTGACTGGTCGGAAGCCACTAGACAGTTCGCGAATTCGATCAGAGCAGTCACTTGTGAGGTGGGCTACACCCCAACTCCATGATATAGATGCCTTGGCAAAAATGGTGGATCCTACTTTGAATGGCATGTATCCTGCAAAGTCGCTGTCACGCTTTGCTGATATCATTGCCCTCTGTGTTCAGCCGGAACCTGAATTTCGACCTCCAATGTCTGAGGTGGTGCAAGCATTGGTCCGGCTAGTGCAAAGAGCAAGTGTGGTTAAAAGACGACCCAGTGACGAATCTGGCACTGGTCACAAGACCCCAGAACATGAGGCCATAGACATGTCATTTTAA 2142 0.4416 MPAPPSPLSPSLAFIFLALLPLSLANTDPSDVQALEVMYNALNSPTQLTGWRIGGGDPCGESWKGVTCEGSAVVSIELSGLGLDGTLGYLLSNLMSLRKLDLSDNKIHDTIPYQLPPNLTSLNLARNNLSGNLPYSFSAMVSLNYLNLSNNALSMTVGDVFASLSDLGILDLSFNNFSGDLPPSFGALTNLSSLFLQKNQMTGSLSVLVGLPLDTLNVANNNFSGWIPHEISSIHRFIYDGNSFENTPAPLPPALTLPPPSGSHSHHHSGSGSHNTTEASDNENSDGHTGLTVGAVVGIVLGSVVVAAIVLFALVFFIQKRKGKKTGPRNFSGSLPHGVINVTPQMQEQRVKSAAVVTDLKPRQAENVSVERLPAKSGSVRHMKSPITSTSYTVASLQSATNSFSQEFIIGEGSLGRVYKADFPNGKEMAIKKIDNSALSLQEEDNFLEAVSNMSRLRHPNIVTLTGYCAEHGQRLLVYEYIGNGNLHDMLHFAEDSSGKALSWNARVRIALGTARALEYLHEVCLPSVVHRNFKSANILLDEELNPHLSDCGLAALTPNTERQVSTQMVGSFGYSAPEFALSGVYTVKSDVYSFGVVMLELLTGRKPLDSSRIRSEQSLVRWATPQLHDIDALAKMVDPTLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRRPSDESGTGHKTPEHEAIDMSF 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00847 713 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 28 255 - -
Phco11g00847 713 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 17 683 IPR046959 -
Phco11g00847 713 CDD STKc_IRAK 410 682 - -
Phco11g00847 713 ProSiteProfiles Leucine-rich repeat profile. 96 117 IPR001611 GO:0005515
Phco11g00847 713 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Phco11g00847 713 Gene3D Transferase(Phosphotransferase) domain 1 482 701 - -
Phco11g00847 713 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 482 693 - -
Phco11g00847 713 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 369 481 - -
Phco11g00847 713 SUPERFAMILY Protein kinase-like (PK-like) 381 679 IPR011009 -
Phco11g00847 713 Gene3D Phosphorylase Kinase; domain 1 365 481 - -
Phco11g00847 713 MobiDBLite consensus disorder prediction 262 286 - -
Phco11g00847 713 SUPERFAMILY L domain-like 28 234 - -
Phco11g00847 713 MobiDBLite consensus disorder prediction 690 713 - -
Phco11g00847 713 MobiDBLite consensus disorder prediction 249 286 - -
Phco11g00847 713 Pfam Protein kinase domain 407 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00847 713 Pfam Leucine rich repeat 117 177 IPR001611 GO:0005515
Phco11g00847 713 Gene3D Ribonuclease Inhibitor 28 274 IPR032675 -
Phco11g00847 713 ProSiteProfiles Protein kinase domain profile. 404 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00847 Phco-Chr11 6200733 6206326 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Phco11g00847 Pkinase 1e-44 CL0016