Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00844 ATGACCACACATTCATCCACAAAACCAAAATCACACTATCTTTTCCTTCTCTTAATTCAGTTGTTAATTTCCACAAGAGTCAAAGGTAAGTGTGATTCTGGTTGCAACCTTGCTCTAGCTTCCTACTACATAAGCGACGGCACGAACCTCACTTTCATTAGCACTCTTTTTGGAAAGCCCACATCGGAGATTCTCAAGTACAACCCAAGCGTGAAAGACCCCAACGTGATTAAAAGCCGAACAAGAATCAACGTGCCGTTCTCGTGTGAGTGCTTAAACGGTGTGTTTTTGGGGCACACTTTCTCGTACCGGATCCAACACGGGAACACCTACAAGGTGGTTGCGAACTCTGTTTTTTCGAACCTGACCACCGAGGATTGGGTGAGCAGGGTCAACAGTTACCCGTCCAATAATATTCCCGACAACGTCAACATCAACGTCACCATCAACTGCTCCTGCGGAAACCGACATGTGTCCAAGCATTATGGGCTGTTTTTGACGTACCCGCTTCGGCTGGGTGATCACTTGAAAGGGGTTGCGGCGGAATCCGGTGTGCCGGCGGAACTGCTGGTACGCTACAACCCCACCTCCGATTTCAGTTCTGGGAATGGACTCGTGTTCGTGCCGGCTAAAGATGAAAATGGAAACTTTCCACCTATGCTGCTGAGTGGAGCTATTGCCGGCATAGCCGTTGGAGGAGCTGCTGGGGTCTTAATTTTGGCACTTGTTCTATATGTTGGTCTACACAGAAGAAGGAAAGTGGCTGAGGTGTCCCTTCTCGCAGTACCAGGAGCATCTGAAGATCAGTGTAGTCCACTCTATCATGGTTTGGGAAGCAGCTTGGACAAGGCATCGGAATCTTCTGTTGTTGCTTCTCCAAGGTTGACAGGGATTACAGTGGACAAGTCAGTGGAGTTCTCATATGGGGAGCTAGACAAGGCCACTGATGGCTTTAGTGTGGCTAATATAATTGGTCAAGGTGGCTTTGGATCTGTTTACTATGCTGAGCTTCGGAGTGAGAAAGCTGCAATTAAAAAGATGGATATGCAAGCATCAAATGAATTCCTTGCAGAACTAAAGGTTTTAACGCATGTCCATCACTTGAACTTGGTGCGGTTAATAGGATATTGTGTTGAGGGCTCCTTATTTTTGGTTTATGAGTATATTGAGAACGGCAATTTAAGCCAACATTTGCGAGGCTCAGGGAGGGATCCGTTAACATGGGGAGCTAGAGTGCAAATTGCTCTTGATGCAGCAAGAGGATTGGAATACATCCATGAACATACAGTTCCAGTCTACATCCATAGAGATATTAAATCAGCAAACATTTTGATAGACAAAAACTTTCGCGCAAAGGTTGCAGATTTTGGTCTCACAAAATTGACTGAGTATGGTAGTTCTTCATTAAACACGCGTCTTGTGGGTACCTTTGGTTATATGCCTCCAGAATATGCACAATATGGTGATGTTTCCTCCAAAGTAGACGTATATGCTTTTGGAGTTGTTCTCTATGAACTCATATCAGGCAAAGAAGCTATCGTCAAGACAAACGATCCTGAGAGTGAATCAAAAGGACTAGTCGCCTTGTTTGAAGAAGTTCTTGGTCTCTCAGATCCAAAAGAAAATCTTCGTCAACTAGTTGACCCTAGACTTGGTGACAACTACCCTCTTGACTCTGTATTTAAGGTATCTCAGCTTGCCAAAGCATGTACACATGAAAACCCTCAACTTAGGCCAAGCATGAGATCAATTGTTGTTGCCTTAATGACACTTTCATCTGCAACTGAGGATTGGGATGTTGGTTCCTTCTATGAAAACCAAGCTTTAGTGCACCTTATGTCTGGAAGGTAG 1851 0.4479 MTTHSSTKPKSHYLFLLLIQLLISTRVKGKCDSGCNLALASYYISDGTNLTFISTLFGKPTSEILKYNPSVKDPNVIKSRTRINVPFSCECLNGVFLGHTFSYRIQHGNTYKVVANSVFSNLTTEDWVSRVNSYPSNNIPDNVNINVTINCSCGNRHVSKHYGLFLTYPLRLGDHLKGVAAESGVPAELLVRYNPTSDFSSGNGLVFVPAKDENGNFPPMLLSGAIAGIAVGGAAGVLILALVLYVGLHRRRKVAEVSLLAVPGASEDQCSPLYHGLGSSLDKASESSVVASPRLTGITVDKSVEFSYGELDKATDGFSVANIIGQGGFGSVYYAELRSEKAAIKKMDMQASNEFLAELKVLTHVHHLNLVRLIGYCVEGSLFLVYEYIENGNLSQHLRGSGRDPLTWGARVQIALDAARGLEYIHEHTVPVYIHRDIKSANILIDKNFRAKVADFGLTKLTEYGSSSLNTRLVGTFGYMPPEYAQYGDVSSKVDVYAFGVVLYELISGKEAIVKTNDPESESKGLVALFEEVLGLSDPKENLRQLVDPRLGDNYPLDSVFKVSQLAKACTHENPQLRPSMRSIVVALMTLSSATEDWDVGSFYENQALVHLMSGR 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00844 616 ProSiteProfiles Protein kinase domain profile. 318 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00844 616 SMART serkin_6 318 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00844 616 Gene3D Transferase(Phosphotransferase) domain 1 389 600 - -
Phco11g00844 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 433 445 IPR008271 GO:0004672|GO:0006468
Phco11g00844 616 SUPERFAMILY Protein kinase-like (PK-like) 298 588 IPR011009 -
Phco11g00844 616 FunFam PTI1-like tyrosine-protein kinase 3 389 602 - -
Phco11g00844 616 ProSiteProfiles LysM domain profile. 40 85 IPR018392 -
Phco11g00844 616 ProSitePatterns Protein kinases ATP-binding region signature. 324 346 IPR017441 GO:0005524
Phco11g00844 616 CDD STKc_IRAK 324 585 - -
Phco11g00844 616 FunFam LysM receptor kinase 2 297 388 - -
Phco11g00844 616 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 16 602 IPR044812 GO:0019199|GO:0045087
Phco11g00844 616 Gene3D Phosphorylase Kinase; domain 1 299 388 - -
Phco11g00844 616 Pfam Protein tyrosine and serine/threonine kinase 321 587 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00844 Phco-Chr11 6177040 6183630 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Phco11g00844 PK_Tyr_Ser-Thr 1.4e-47 CL0016