Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00843 ATGAAAATTATATTAAGAAGACAAGAGAAGTCAAAGGATCATACTGACTATAAGATGAAGTTCTCAAGGCCTGCAAAACCCTCTGGAATTCGAAAGAGATCAAATGAGCAATACTTATCCAATAGTCCTAAATCAAGACAAAATGGAGATGCTCCTATTGTACTAGAAGAATGGTCAAACCGACATACTGATAACCTTACTGGCAAAATCCCAAGAGGCTCAAGAGGTTTTGAAAGTTCAAAAAGGAGAAAGGTTATAGAAGACCATACCATAAAATCCAAGCCGAAATGTGAAGAAGATGTTTTTAGTTGTAATAAGAGGACTACTGAATGTCCTTTTAGTAAAGAATTAGAGCCAAGAAAGTGTCTTGCTGCATTGAAGAAGAAAAGAAAATTTGAAGACGATATCTTGGCTGACCATTTGGGCGGTTACAAGAATTTTGTTCCTTCAAAGACAAATTCCAGAAGCAAAGCTAGAAAAATTGATAACGTGAAGGATACAGAGCAAACTTCTAAAAAATGTCATCAGTGTATGAAAAAGGAGAGGCCAGTCTTCGTACCTTGTACTAAATGTCGGAAACTGTATTGTTTGTGGTGCATCAGGAAATGGTATCCCAATCTTACAATATCAGACATTTCACACGAGTGCCCCTTTTGCCAAAACAATTGCAATTGCAGTGTTTGCTTGGGCTCAACAGGAACGATTAAGACATCTAACAGCAGCATCACAGATGACGAAAAGGTTCAACATCTTCAATACATGATTAACTTACTCATTCCATTTATACAACATATTTGTGAAGAACAAACTCAAGAGCACGAGATTGAAGCTAAAATACAAGGAAAATCAAGTTCTGAGATTGAGATACCACAAACATCTTGTGAAAATGAACGTATCTATTGTGACCATTGTGCTACTTCATTTACTGATCTTTATCGAAGCTGCCCCGAGTGTTCCTTTGAAATCTGCCTTAACTGTTGCAAAGAAATACGCAATGGAAGTATATCACCTCGGTCTGAAAAGAAGTTTCAATATGTGAATAGGGGGTATGATTATATGCATGGTGGTGATCCATTACCAGTGTCTGGTAATTTAGGGACTTTAGGAGGTCCTTCTAAGATATGTACCAAATGGAAGGCCAACAGCGATGGAAGTATTACATGTGCACCAAAAGAAATGGGGGGCTGTGGTGCTCCTGTGATGGAGCTGAAGCGCATTCTTTTAAATGGGTGGATATCAGACTTGGAAGCCAAAGCTCGTAACATGCTAAAAGGCTTTTCTAAAACTGAACAAACAACTCATCAGAAAGAAGAAATATCAAGTTGCAATTCCAAGATAAGAGCAGCTTTTAGAGATGGCACAAGTGATAATAACTTATACTGTCCATCATCATGTGACCTCATAAATGAAGGGCTGTTTCTCTTCCGAAAACATTGGACTCAAGGTGAACCAATCATAGTTCGAGATGTTCTTAAGCAGGGTACAGGTCTTAGTTGGGAGCCAATGGTGACACTGCGAGCCCTATGTGAAAACGTGGTTCCAGGAATCAGCTCAAGTATGACTGAATTGAAGGCCATTGATTGCCTTTCTTGTTGTGAGGTAGAAATCAATACTCGTACATTCTTCAAGGGTTATACCCAAGGAAGAACACATCAAAACCTCTGGCCAGAGATGCTGAAGTTAAAAGACTGGCCTCCCTCTGACAAGTTTGATGATCTTTTGCCTCGCCATTGTGACGAGTTTATCCGCTGCTTGCCATTTCAAGAGTATTGTGATCCTCGAGATGGGATCCTCAACCTTGCTGTAAAGTTGCCATCCCATGTTCTAAAGCCAGACCTTGGTCCAAAAACATATATTGCTTATGGGATCAAAGAGGAACTTGGAAGGGGAGATTCAGTAACAAAACTTCACTATGATATGTCTGATGCTGTGAATATTTTGATCCACACGACTGAGGTAACATTGAGTGATGAACAAAATTCAGTTATTCCAAAACTGAAAAAAGCACACATGGCCCAAGATGAGAAAGAGGGACATGGTCGAGAAAGGGTCGATGAATGGCTGAATGAAGGACTTTGCAAAGACAACAGAGAAGAATATAACTGTGCTATTTCTAAAGAATCAGGTGGTGCTCTTTGGGACATCTTTCGGAGAGAGGATACTGAAAAGTTAGAAGCATATCTAAGAAAGCACTCTAAAGAATTTAGGCATACCTATTGCTCTCGAGTTGAAGAGGTTGTCCATCCAATTAATGACCAATGCTTTTACTTGACTTTGGAACACAAGAAGAATCTGAAGAAGGAGTTTGGTGTAGAACCTTGGACTTTTGAGCAACAACTTGGGGAGGCAGTATTTATTCCTGCTGGATGTGCACATCAAGTCAGGAATCTTAAGTCATGCACAAAAGTTGCTGTAGATTTTGTGTCCCCAGAAAATATTCATATGTGCTTGCATTTAACTGAAGAGTTCCGTCGTCTTCCTAAGAATCACAAGGCCAGAGAAGATAAACTTGAGATACAGAAAATGATCGTCTATGCTGTTGACAATGCTGTCAAAGAATTAGAAGCTTTACGTTCTTGA 2580 0.3938 MKIILRRQEKSKDHTDYKMKFSRPAKPSGIRKRSNEQYLSNSPKSRQNGDAPIVLEEWSNRHTDNLTGKIPRGSRGFESSKRRKVIEDHTIKSKPKCEEDVFSCNKRTTECPFSKELEPRKCLAALKKKRKFEDDILADHLGGYKNFVPSKTNSRSKARKIDNVKDTEQTSKKCHQCMKKERPVFVPCTKCRKLYCLWCIRKWYPNLTISDISHECPFCQNNCNCSVCLGSTGTIKTSNSSITDDEKVQHLQYMINLLIPFIQHICEEQTQEHEIEAKIQGKSSSEIEIPQTSCENERIYCDHCATSFTDLYRSCPECSFEICLNCCKEIRNGSISPRSEKKFQYVNRGYDYMHGGDPLPVSGNLGTLGGPSKICTKWKANSDGSITCAPKEMGGCGAPVMELKRILLNGWISDLEAKARNMLKGFSKTEQTTHQKEEISSCNSKIRAAFRDGTSDNNLYCPSSCDLINEGLFLFRKHWTQGEPIIVRDVLKQGTGLSWEPMVTLRALCENVVPGISSSMTELKAIDCLSCCEVEINTRTFFKGYTQGRTHQNLWPEMLKLKDWPPSDKFDDLLPRHCDEFIRCLPFQEYCDPRDGILNLAVKLPSHVLKPDLGPKTYIAYGIKEELGRGDSVTKLHYDMSDAVNILIHTTEVTLSDEQNSVIPKLKKAHMAQDEKEGHGRERVDEWLNEGLCKDNREEYNCAISKESGGALWDIFRREDTEKLEAYLRKHSKEFRHTYCSRVEEVVHPINDQCFYLTLEHKKNLKKEFGVEPWTFEQQLGEAVFIPAGCAHQVRNLKSCTKVAVDFVSPENIHMCLHLTEEFRRLPKNHKAREDKLEIQKMIVYAVDNAVKELEALRS 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00843 859 SMART cupin_9 574 824 IPR003347 -
Phco11g00843 859 MobiDBLite consensus disorder prediction 33 48 - -
Phco11g00843 859 MobiDBLite consensus disorder prediction 1 21 - -
Phco11g00843 859 Gene3D Cupin 464 833 - -
Phco11g00843 859 FunFam Transcription factor jumonji domain-containing protein 456 833 - -
Phco11g00843 859 ProSiteProfiles Zinc finger RING-type profile. 174 220 IPR001841 -
Phco11g00843 859 MobiDBLite consensus disorder prediction 1 82 - -
Phco11g00843 859 SUPERFAMILY Clavaminate synthase-like 473 857 - -
Phco11g00843 859 ProSiteProfiles JmjC domain profile. 593 824 IPR003347 -
Phco11g00843 859 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 30 858 IPR045109 GO:0032454|GO:0033169
Phco11g00843 859 Pfam JmjC domain, hydroxylase 709 807 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00843 Phco-Chr11 6167689 6171811 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Phco11g00843 JmjC 4.6e-13 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00843 11 6167689 6171811 Phco11g00843 11 6167689 6171811 ECH
Phco8g02498 8 28940659 28944961 Phco11g00843 11 6167689 6171811 PCT