Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00828 ATGGACAAAGGATGGGGACTCACCCTTGATACCTCTTCCTCCCAATCTCTCTCGTTATTTCCTTCCAAACACCCTTCCACTTCTTTCTCCAAACTTACCACCGACACCATGTTCCCTCTCCTCGGATTCCCCGTCAACCTTAGCCGTCCTTCTGTCAAGGACGACGAACACAACCGCAAAGTCGTCGGTGAAGTCGACTTCTTCTCTGATAGAATCACCAAACCAGCATCCCCACCCTCCCACGACCAACACGTTAAACCCAACATCGTCAAGAAGGAAATTGTTGAAACACCTCTCCACGTTAATACTGGTTTACAGCTCCTTACTGCTAACACTGGGAGTGATCAATCTACCGTCGATGATGGGGTTTCATCGGATGCGGAAGATAAGCTAGCCAAAACCACCGAGCTTGCACAGATGCAAGTGGAGCTTCAACGCATGAACGCAGAGAACAAGAAGCTGAAAGAGATGCTAAGCCATGTGACCGGTAACTACACCGCCTTGCAGATGCATCTTATGACATTAATGCATCAGAACCAGCGCACGGACAACACAGAAAATGAGGTTGTTCAGGGAAAGGCCGGGGATAAAAATCATGCTGTCGGTGGAGGAAAGATTCCAAGGCAATTCCTTGACATAGGTCCCAGCGGCGCAGCCGAAGTAGATGATCAAGTGTCTGATTCTTCTTCGGATGAGAGAACGCGATCGAGCACACCTCAGAACAATAATAATGAAGTTGGAACAAGAGATGGTGCGAAAAATGTTAATGGCAAAAGAGAGTTGGGAAGGGAAGGGAGTCCAGACTCAGAATCACAAGGTTGGGCTCCTAATAAGCTTCAGAAAGTTAGCCCCTCCAATGCTATCGACCAGTCCACTACAGAAGCCACAATGAGAAAAGCTCGTGTCTCAGTTCGTGCCCGATCAGAAGCTCCCATGATAAGCGATGGGTGCCAATGGCGAAAATATGGACAAAAAATGGCCAAGGGGAACCCATGTCCTCGAGCATATTATAGATGCACTATGGCAGTGGGTTGCCCAGTTCGCAAACAAGTTCAACGTTGTGCCGAGGATAGAACAATTTTGGTAACAACATATGAAGGTACACATAACCATCCACTGCCACCTGCTGCTATGGCCATGGCGTCAACCACTGCAGCTGCTGCTAGCATGTTGCTGTCAGGGTCAATGTCCAGTGCAGATGGAATAATGAACCCAAATCTGCTAGCCAGAGCAATTCTTCCTTGCAATTCTAGCATGGCAACACTTTCAGCTTCAGCACCATTTCCAACTGTGACTTTAGACCTCACACACAACCCAAACCCATTACAATTTCAGAGACCTTCTACCCCATTCCAAGTGCCCTTCCTCCAAGGGCAACCTCAGAACTTTGGGTCCGGAGCCACCCCAATTGCACAAGCACAAGCACAAGCACTTTATAATCAATCAAAATTCTCTGGTCTTCAGCTATCTCAGGAAGTAGGTTCTTCCCAGTTGGCCGCACAAGCTACTAGACCACCCTTACAGCCTAGCCAGCAACCCTCGTCGGCTGATACAGTCAGTGCCGCGGCCGCCGCTATCACCTCCGATCCAAACTTCACCGCCGTCCTCGCCGCCGCAATCTCCTCTATCATAGGCGGTGCTCATAATGCAAACAACACCACCAATAACAACAATAGCACAAGCAGGACTACCATTAGCAGCTTTTCAGGAAACTGA 1716 0.4883 MDKGWGLTLDTSSSQSLSLFPSKHPSTSFSKLTTDTMFPLLGFPVNLSRPSVKDDEHNRKVVGEVDFFSDRITKPASPPSHDQHVKPNIVKKEIVETPLHVNTGLQLLTANTGSDQSTVDDGVSSDAEDKLAKTTELAQMQVELQRMNAENKKLKEMLSHVTGNYTALQMHLMTLMHQNQRTDNTENEVVQGKAGDKNHAVGGGKIPRQFLDIGPSGAAEVDDQVSDSSSDERTRSSTPQNNNNEVGTRDGAKNVNGKRELGREGSPDSESQGWAPNKLQKVSPSNAIDQSTTEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILVTTYEGTHNHPLPPAAMAMASTTAAAASMLLSGSMSSADGIMNPNLLARAILPCNSSMATLSASAPFPTVTLDLTHNPNPLQFQRPSTPFQVPFLQGQPQNFGSGATPIAQAQAQALYNQSKFSGLQLSQEVGSSQLAAQATRPPLQPSQQPSSADTVSAAAAAITSDPNFTAVLAAAISSIIGGAHNANNTTNNNNSTSRTTISSFSGN 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00828 571 Pfam WRKY DNA -binding domain 315 372 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco11g00828 571 SUPERFAMILY WRKY DNA-binding domain 306 374 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco11g00828 571 ProSiteProfiles WRKY domain profile. 308 374 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco11g00828 571 Gene3D WRKY domain 298 375 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco11g00828 571 FunFam probable WRKY transcription factor 31 298 375 - -
Phco11g00828 571 SMART WRKY_cls 313 373 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco11g00828 571 MobiDBLite consensus disorder prediction 270 297 - -
Phco11g00828 571 Coils Coil 130 164 - -
Phco11g00828 571 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 110 559 IPR044810 GO:0003700
Phco11g00828 571 MobiDBLite consensus disorder prediction 252 266 - -
Phco11g00828 571 MobiDBLite consensus disorder prediction 181 297 - -
Phco11g00828 571 MobiDBLite consensus disorder prediction 497 516 - -
Phco11g00828 571 MobiDBLite consensus disorder prediction 1 25 - -
Phco11g00828 571 MobiDBLite consensus disorder prediction 231 250 - -
Phco11g00828 571 MobiDBLite consensus disorder prediction 548 571 - -
Phco11g00828 571 MobiDBLite consensus disorder prediction 7 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00828 Phco-Chr11 6096068 6098421 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Phco11g00828 WRKY 6.7e-24 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00828 11 6096068 6098421 Phco11g00828 11 6096068 6098421 ECH
Phco10g01332 10 35804334 35806971 Phco11g00828 11 6096068 6098421 ECH
Phco9g01126 9 10406197 10409081 Phco11g00828 11 6096068 6098421 ECH