LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco11g00826	ATGGACTGGACTAGAGGCCACATGCTCGGCCGTGGTTCCTCCGCGGCCGTCTATATCGCTGAGTCCCACCGATCCGGTCGAGTGTTTGCCGTCAAGTCGGCGGAGCTACACCGGTCGGAATTCCTCAAAAGGGAGGAGATGATTCTTTCCACTCTAAAGTGTCCTCATATTGTGGCCTACCAAGGTTTTGACACCACATTTGAGAACGGTGTTTACTGGTTCAACATGTTCATGGAATACGCGCCTCACGGGACGCTGGCGGAGCGCGGTGGTGGCATGGAAGAAGCGGTGGTGGGATCCTACACGCGGCAAATTCTGCAGGCGCTGCACTACCTCCACTCCAATGGGATAGTGCATTGCGACGTGAAGGGGCAGAATGTGTTGGTTACGGATGAGGGGGTGAAAATTGCGGATTTGGGTTGTGCTCGAAGGGTGGGGGAGTTGTCAGCAATCGCCGGAACGCCGGGGTTCATGTCGCCGGAGGTGGCGCGTGGGGAGCAGCAGGGGTTCCCTGCTGACGTGTGGGCTCTGGGGTGCACGGTGCTGGAGATGATCACCGGGAAGCCTCCGTGGCACGGCGGCGGTGACCCGGCGGCGGTGGTTTACAGGATCGGGTTCTCCGATGAGTTGCCGGAGATTCCTAGCGGTGTTTCCGAGCAGGGGAGGGACTTTTTGGGAAAGTGTTTGAAGAGGGACCCGAATGAGAGGTGGTCGGTGGAGGAGCTTCTTGGACACGGTTTTGTTAAGGAATGCACGGAATTGAAGTTGTTTTTGTTGGATTCAGACACTCCAACTGGTGTGTTGGAACGAGGATTTTGGGATTCCTTGGAGACAATTGAGCATGGAGCACGTGATTGCCCCTCTCCTAGGGACAGAATTGGTAGGTTGTTTTCGGATGAACCAGTTTGGGTATGGAACAACGATGATGATGAGCAATGGGTGACGGTGAGGAGCAATGAGTTCCATGAAGGATTATCCCTTCACAAAACAGAAACTACTTTTAATATGGTTAGTGATGAGGAAACCGGTTTGGTTACTTTATGTGAACCTAAAATTGTAGTAACAAGTGTTGAATTGAGTAGATTATGGAATGCTACTACTTGTGATGATTGTTATCTTAGAGGCAGAAACTGTGATTGTCGCTGCAGAGAATCATTGTTGTCAGTTTGTGTGTGTCTAGTGATTGTTCTCCATGGAAAATTTGATTCTCATGGGATTGGCCTTCTTTTTCTGCTCTCTTTCTCACTCTTTAATTCAACTTTGGATCGACTCAACACTTTTCATTTTCATCACTATAATATAATACGGGATAATGTGCGCGCCTCATAA	1329	0.5034	MDWTRGHMLGRGSSAAVYIAESHRSGRVFAVKSAELHRSEFLKREEMILSTLKCPHIVAYQGFDTTFENGVYWFNMFMEYAPHGTLAERGGGMEEAVVGSYTRQILQALHYLHSNGIVHCDVKGQNVLVTDEGVKIADLGCARRVGELSAIAGTPGFMSPEVARGEQQGFPADVWALGCTVLEMITGKPPWHGGGDPAAVVYRIGFSDELPEIPSGVSEQGRDFLGKCLKRDPNERWSVEELLGHGFVKECTELKLFLLDSDTPTGVLERGFWDSLETIEHGARDCPSPRDRIGRLFSDEPVWVWNNDDDEQWVTVRSNEFHEGLSLHKTETTFNMVSDEETGLVTLCEPKIVVTSVELSRLWNATTCDDCYLRGRNCDCRCRESLLSVCVCLVIVLHGKFDSHGIGLLFLLSFSLFNSTLDRLNTFHFHHYNIIRDNVRAS	442

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco11g00826	442	Pfam	Protein kinase domain	5	247	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phco11g00826	442	Gene3D	Transferase(Phosphotransferase) domain 1	2	268	-	-
	Phco11g00826	442	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	117	129	IPR008271	GO:0004672\|GO:0006468
	Phco11g00826	442	CDD	STKc_MAPKKK	2	248	-	-
	Phco11g00826	442	PANTHER	CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED	3	330	-	-
	Phco11g00826	442	ProSiteProfiles	Protein kinase domain profile.	3	248	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phco11g00826	442	SUPERFAMILY	Protein kinase-like (PK-like)	2	270	IPR011009	-
	Phco11g00826	442	ProSitePatterns	Protein kinases ATP-binding region signature.	9	32	IPR017441	GO:0005524
	Phco11g00826	442	SMART	serkin_6	3	248	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco11g00826	Phco-Chr11	6074939	6076267	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Phco11g00826		Pkinase	2.1e-52	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco10g01330	10	35784050	35785246	Phco11g00826	11	6074939	6076267	ECH
	Phco9g01127	9	10438778	10439842	Phco11g00826	11	6074939	6076267	ECH
	Phco11g00826	11	6074939	6076267	Phco11g00826	11	6074939	6076267	ECH
	Phco11g00826	11	6074939	6076267	Phco8g02506	8	29102211	29103456	ECH