Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00777 ATGATGGTCATCTTTCTCGAATTTGGTTGTTTATCCTATGAATGTTCAAAGATTAATTTGAATTCAGTTACAGCAGCTAGCATGGATCAAAACCAGAATGGTCAACCAGGAAGAGGAATTGGTTCAGCTCCAGCAAAAGAAGCACATAACAAGAACCAATATCAATCCAACCCCGTGATGTCACCTACTACAAATCCTCCTGTTCAGACCGTTGGTCCTTCTATCCCTTCATCCTACCCACTAGAGCCTCACCGTGCTCTCCAATGCATGTACCGACAGCAGCAGCAACAGGAGCAGTTGCAGGAAAAAGTCAAGAGCTTTTGGGCACAACAGCTGAAGCAAATTGAGGAGGGCACTGATTTAAGGAGTCGTCCTAGTATGCCTCTGTCGAGGATTAGGAAGATCATGAAGAGTGATGCAGATGTGAAGTTGGTTTCAGCTGAGACTCCTGTGCTGTTTGCCAAGGCCTGCGAACTGTTCATAATGGATCTCACAATGAAGGCTTGGGCTAACGCTGAGAACAACAATAGGGGGAAAATCCAGAAGGTTGACATTGCATCCGCAATCGCAGGGACTGATGTGTTTGATTTTCTTGATGATATTGTCCCCATTCCTAGGGATGACACAAACACAATGATGCATCAATTGCTTCCAGGCAATGCTCCACCTCCAACTGAACATGTTCCTTACTCTTATATGCCTCCTCCTCAACATGTTGCAACCCCACCATTTCAGTCTGTTGCTTCTACAACTCTTCATCAAGTTCCCCATGCGCTGCTAACCTATCCTCTGATTCCAACTTCAACTGTCCCACCCAATCAGCAAAATCCTTCTCCTGATTCAGATGATCGAACAAATTAA 861 0.4495 MMVIFLEFGCLSYECSKINLNSVTAASMDQNQNGQPGRGIGSAPAKEAHNKNQYQSNPVMSPTTNPPVQTVGPSIPSSYPLEPHRALQCMYRQQQQQEQLQEKVKSFWAQQLKQIEEGTDLRSRPSMPLSRIRKIMKSDADVKLVSAETPVLFAKACELFIMDLTMKAWANAENNNRGKIQKVDIASAIAGTDVFDFLDDIVPIPRDDTNTMMHQLLPGNAPPPTEHVPYSYMPPPQHVATPPFQSVASTTLHQVPHALLTYPLIPTSTVPPNQQNPSPDSDDRTN 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00777 286 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 88 207 - -
Phco11g00777 286 Gene3D Histone, subunit A 88 203 IPR009072 GO:0046982
Phco11g00777 286 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 126 189 IPR003958 -
Phco11g00777 286 MobiDBLite consensus disorder prediction 266 286 - -
Phco11g00777 286 MobiDBLite consensus disorder prediction 29 69 - -
Phco11g00777 286 MobiDBLite consensus disorder prediction 48 69 - -
Phco11g00777 286 FunFam Nuclear transcription factor Y subunit C 91 204 - -
Phco11g00777 286 SUPERFAMILY Histone-fold 123 218 IPR009072 GO:0046982
Phco11g00777 286 MobiDBLite consensus disorder prediction 264 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00777 Phco-Chr11 5635672 5636532 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Phco11g00777 CBFD_NFYB_HMF 3.5e-13 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00777 11 5635672 5636532 Phco11g00777 11 5635672 5636532 ECH