Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00770 ATGTCTCACATAGCTGTCGAGAGGAACCGAAGAAGACAGATGAATGAACATCTCAAAGTTTTAAGATCGTTGACCCCATGTTTCTATATCAAAAGGGGAGATCAAGCATCTATAATCGGGGGTGTCATAGAATTCATCAAGGAGTTACACCAAGTTCTTCAGGCTTTGGAGTCCCAGAAAAGAAGAAAGAGTTTAAGCCCTAGCCCTGGTCCGAGTCCACGAACACTGCAGCCAACGTTTCATCAACTTGATAGCTCCTCCATAATTGGGACCAATTCTTTCAAGGAACTAGGAGCAAGCTGCAACTCTTCTGTTGCGGATGTTGAAGTGAAAATATCGGGTTCAAATGTGATCTTGAAAGTCATTTCCCAAAGAATTCCGGGTCAAGTTGCAAGGATCATAACTGTTTTGGAAAGTCTTTCCTTTGAAGTTCTTCATCTGAACATCAGCAGCATGGAGGAGACTGTCCTTTACCAGTTTGTGGTCAAGATAGAACTGGGATGTCAACTAAGTCTGGAGGAACTAGCAATAGAAGTGCAACAAAGCTTCTGCTCAGAGCCTATAAGTATGCTGTGA 576 0.4288 MSHIAVERNRRRQMNEHLKVLRSLTPCFYIKRGDQASIIGGVIEFIKELHQVLQALESQKRRKSLSPSPGPSPRTLQPTFHQLDSSSIIGTNSFKELGASCNSSVADVEVKISGSNVILKVISQRIPGQVARIITVLESLSFEVLHLNISSMEETVLYQFVVKIELGCQLSLEELAIEVQQSFCSEPISML 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00770 191 SMART finulus 4 55 IPR011598 GO:0046983
Phco11g00770 191 FunFam Transcription factor MUTE 1 66 - -
Phco11g00770 191 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983
Phco11g00770 191 Pfam Helix-loop-helix DNA-binding domain 2 49 IPR011598 GO:0046983
Phco11g00770 191 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 68 IPR036638 GO:0046983
Phco11g00770 191 Gene3D - 1 64 IPR036638 GO:0046983
Phco11g00770 191 PANTHER TRANSCRIPTION FACTOR FAMA 1 183 IPR044283 GO:0003700|GO:0010052
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00770 Phco-Chr11 5565385 5567145 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco11g00770 HLH 4.5e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00770 11 5565385 5567145 Phco11g00770 11 5565385 5567145 ECH