Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00735 ATGATTGTAAAGGAGCATTTTGTTGGTACTGAGCTGGCAATGAATAATGCTATTGTGGAGGAGGAAATAGATTTTTCTTGTGATCCGTACATAGGGTTAGAATTTGACACAGCAGATGAAGCACTACAGTTTTACACTTCATATGCAAATCGAACAGGATTTAAAGTTCGGATTGGTCAGCTGTATCGATCAAGAACTGATGGGTCAGTTTCTTCGCGAAGATTTGTGTGCTCAAAGGAGGGACATCAACTCAGTTCAAGAACAGGCTGTCCAGCATTCATAAGGGTGCAAATAAATGGTTCTGGAAAGTGGGTGATTGATCATTTTCACAAGGACCATAATCACAATCTTGAAATCAGTGGTGAAAACTGTACTCCAACATTGCAACAAAAGGGTGGTACAGTTGTCAACTCTCTTACTGAGTTTACTCGTAGGCCGAGGAAGAAATTGCTTGAAGAAGTCAATAATGAATCCTCTTGTCCCTTTGGCATTATTGATTTCAAGCGCCTGAGAAAGGAAGAACTTGAAGGACAGCCCAAGACTGAACCATATGTGGGTCAAGAGTTCAGTTCACCTAATGAAGCCTACCAATTTTATCATGCATATGCAGCACATATGGGTTTTGGAGTTCGAATTGGTCAATTGTTTCGTTCTAAAAATGATGGATTGATTACATCTCGCCGATTTGTTTGCTCTAAAGAGGGGTTCCAGCATCCTTCAAGAGTTGGCTGTGGGGCTTATTTAAGGATTAAAAGACAGCCATCGGGAAAGTGGACAGTGGACCGCCTACGAAAAGATCATAACCATGATCTGGACTCTGAAAAAGAGGGTAGGGCAAAAGGTCTTCATGCTTCTAATATTCTGAATGACGATGCAGATACTGGATTCGTAAACGGTGACTTGTTTAGAATCGATAACTACCCTGTCCCCAGAGGAGGTAGGCAAAATCACATCAGAAGTGAGTGGTACAACATTCTTTTAGAGTATTTTCAAGCAAGACAAACGGAAGATACTGGATTCTTTTATGCTGTGGAAGTTGACAATGGTAATTGTATGAGCATATTTTGGGCGGATGGCAGATCTAGATATTCATGTAGTCAGTTTGGTGACGTCCTAGTCTTAGACACATCATACCGAAAAACTGTCTATTTGGTACCTTTTGCTACTTTTGTTGGGGTTAATCATCACAAACAACCTGTGCTTCTTGGATGTGCTTTAGTTGCCGATGAATCTGAAGAATCTTTCACTTGGTTGTTTCAGACATGGCTTAGGGCAATGTCTGGCCGGCAGCCTCTCACAGTTATTGCTGACCAAGATATTGCAGTCCAGAAGGCAATAGCAAAAGTCTTTCCGGTAACCTATCATCGCTTTTCTTTGTGGCAAATTAAGGCAAAGGAACAAGAGAATATGGGTCTGATGGGTGATGGCTTTACAAAGGACTATGAAAAGTGTGTTTACCAAAGTCAGACAGTTGATGAATTTGACGCCACATGGAATGTGCTACTCAACAAATATGGATTGAAGGACAATGCTTGGCTAAAAGAAATGTATGAGAAACGAGCTTCTTGGGTTCCATTGTATTTAAAGGGCACATTTTTTGCTGGCATTCCCATGAATGAAAGCCTTGATTCATTCTTTGGTGCACTTTTAAATGCCCAGACACCTCTCATGGAGTTCATTCCTCGGTACGAAAGGGGTCTTGAGCGACGCCGTGAGGAAGAAAGAAAAGAGGATTTTAATACTTCTAATTTTCAACCCATTTTGCAAACAAAAGAACCAGTGGAAGAACAATGCAGAAGACTTTACACTCTTGCTGTATTCAAAGTATTTCAAAAAGAGCTATTGCAGTGCTTTAGCTATCTTGGGTTTAAAATATTTGAGGAAGGGGGCCTGAGCAGATATATGGTGCGTAGGTGTGGAAATGACATGGAGAAACATGTAGTTACATTTAATGCATCAAATCTCAGCATTAGTTGTAGCTGTCAGATGTTTGAGTATGATGGTGTTCTTTGTAGGCATGTGTTGAGGGTTTTCCAGATATTACAATTAAGAGAAGTTCCTTCTCGCTACATCTTGCACCGGTGGACAAGAATCGCCGAGGATGGTGTCTTTCCTGACATAGACTCGTGGAGTAGCTCTCAGGAACTTAAAAATTTGATGCTATGGAGTCTAAGAGAAACTGCATCTAAATACATAGATGCTGGTGCAACATCCATTGAAAAGTATAAACTTGCCTATGAAATTTTGCGAGAGGGTGGGAGAAAGCTTTGTTGGCACAGGTGA 2283 0.4091 MIVKEHFVGTELAMNNAIVEEEIDFSCDPYIGLEFDTADEALQFYTSYANRTGFKVRIGQLYRSRTDGSVSSRRFVCSKEGHQLSSRTGCPAFIRVQINGSGKWVIDHFHKDHNHNLEISGENCTPTLQQKGGTVVNSLTEFTRRPRKKLLEEVNNESSCPFGIIDFKRLRKEELEGQPKTEPYVGQEFSSPNEAYQFYHAYAAHMGFGVRIGQLFRSKNDGLITSRRFVCSKEGFQHPSRVGCGAYLRIKRQPSGKWTVDRLRKDHNHDLDSEKEGRAKGLHASNILNDDADTGFVNGDLFRIDNYPVPRGGRQNHIRSEWYNILLEYFQARQTEDTGFFYAVEVDNGNCMSIFWADGRSRYSCSQFGDVLVLDTSYRKTVYLVPFATFVGVNHHKQPVLLGCALVADESEESFTWLFQTWLRAMSGRQPLTVIADQDIAVQKAIAKVFPVTYHRFSLWQIKAKEQENMGLMGDGFTKDYEKCVYQSQTVDEFDATWNVLLNKYGLKDNAWLKEMYEKRASWVPLYLKGTFFAGIPMNESLDSFFGALLNAQTPLMEFIPRYERGLERRREEERKEDFNTSNFQPILQTKEPVEEQCRRLYTLAVFKVFQKELLQCFSYLGFKIFEEGGLSRYMVRRCGNDMEKHVVTFNASNLSISCSCQMFEYDGVLCRHVLRVFQILQLREVPSRYILHRWTRIAEDGVFPDIDSWSSSQELKNLMLWSLRETASKYIDAGATSIEKYKLAYEILREGGRKLCWHR 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00735 760 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 16 124 IPR031052 GO:0006355
Phco11g00735 760 ProSiteProfiles Zinc finger SWIM-type profile. 646 682 IPR007527 GO:0008270
Phco11g00735 760 Pfam MULE transposase domain 371 464 IPR018289 -
Phco11g00735 760 SMART 26again6 657 684 IPR006564 GO:0008270
Phco11g00735 760 Pfam SWIM zinc finger 653 679 IPR007527 GO:0008270
Phco11g00735 760 Pfam FAR1 DNA-binding domain 43 117 IPR004330 -
Phco11g00735 760 Pfam FAR1 DNA-binding domain 197 271 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00735 Phco-Chr11 5265576 5267858 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Phco11g00735 MULE 2.1e-24 CL0219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00735 11 5265576 5267858 Phco11g00735 11 5265576 5267858 ECH