Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00712 ATGGAACCCCAACAATCTCTCCCTCCCATGGACGATTCTGAAGACCCTTCCTCCATTTGGGATTTCTCCTACCTCCTTGATTTCAACCTCGACGAAGACCACACCAATAACTCTCTCCCTATCTCTTCTCCCTTCGACGACGCTCCCGAGATCCCTAACGACCGGGTCCGAAAGCGTGACCCCCGACTCACCTGCTCCAACTTTCTCGCGGGTCATGTCCCCTGCGCCTGCCCCGAACTCGACGCCAAGCTCGAGGACGAGGGTTTGCCTGGCAAGAAACGCCCGCGCACCGCGCGTGCCTCCTCATCCGCCCGATGCCAGGTCCCTGGCTGCGAGGTCGATATCTCCGAACTCAAAGGCTATCACCGCCGACATAGAGTCTGCCTCCGCTGCGCCAATGCCACCACCGTCATCCTCCACGGCGAGTCCAAGAGATACTGCCAGCAGTGCGGGAAGTTTCATGTTTTGTCGGATTTCGACGAAGGGAAACGAAGTTGCAGAAGGAAGTTGGAGCGGCATAACACGCGAAGGCGGAGAAAGCCCCTGGTGGACTCCGGATGTGCTTCTGTCTCCGAACTTGAAGCTGTTACTCAGAATGAGGAAAACAATTTTGATCCGGAAGCAGGAAAAGATTGTTCAAATATGAGTAATGAGATCAACGACGTAGTAGTGTTGCCAGATCATGAAGATGAGCCTGTTCCCATTCTGAGATCAGCTCCTAATGCCCAGAATGTTAATAGTGATAGTGTTGTGTCTTTTCCTGTTTCGGGTGAAACTCGAGTGAATAGTGGGAACACTTCTAATTCGCCTTCTTATTGTGACAATAAGAGTGTCTACACGTCTATGTGCCAAACAGGTCGTATTTCGTTTAAGCTTTATGATTGGAATCCTGCAGAATTTCCTAGAAGGCTACGACACCAAATATTCCAATGGTTGGCGAGCATGCCTGTAGAGTTGGAGGGTTATATCCGCCCTGGGTGCACGATTTTGACAAGTTTTATTGCAATGCCTGAGATTATGTGGATAAATTTACGGAAAGACTCTTTGGAATATGTGAACGAACTTGTTGCTCCTGGAAAGATGTTATCTGGAAGGGGGACTGCACTAGTTCATCTAAATGGCACAATCTTCCGTGTTATGAAAGATGGAACTTCTGTGACGAAAGTCGAGGTAAACTTGCAGGCACCAAGACTTCATTATGTTCATCCTATATGCTTTGAGGCTGGCAAACCTATGGAGTTTGTTGCTTGTGGAAGTAACTTACTGCAGCCTAAATTTCGGCTTCTTGTATCATTTTCTGGAAAGTATCTGAAATGTGAGTATTGTGTACCGTCTCCACATAACTGGACCGAAGAAAATATTTCTTGTGCTTTCGACAATCAGTTATACAAGATATATGTCCCTCATACAGAGGAAAGTCTCTTTGGGCCTGCATTTATCGAGGTGGAGAATGAATGTGGTTTATCAAACTTTATTCCTGTACTCATTGCGGATAAAGAAATTTGTTCTGAAATGAAGACACTGCAGCAAAAATTAGATTCATCTCTCCTTTCTAAACAATTCCGGTCTGCATCTGGTGGTTCTATCTGCAGCTCGTGTGAAACATTTACACTTAGTCACACATCGTCAGACTTACTTGTAGATATAGCATGGTTGCTTAAGGACACCACTTCAGAAAATTTTGACAGAGTGATGACAGCTTCACAAATCCAAAGATATTGTCATTTGTTGGATTTTCTGATGTGCAATGAATCAACAGTCATGTTGAAAAAAATATTACCAAATTTGATAATCTTGACAGAAAGCATGAAATCCAATTTTTTGAGTAATAGGACGAGTTATGTTGATACAAGGCAACTCCTGAATCACATACATGATGCTCAAATTTCCATATATCAGAAACATCAGAAAAATGGAAGTATAATTGTGCAGCCTGAAATGGAAAGCCTTAAACTTGCACAGGGCTGCTCCCAAGATAGCAAGATCGCAGTTGCAATTAACAGTCAGGGTATCCTGTCAAGACCAGATGCAGAGTGGGGAGTACTGAAAAATCTAACTTGTAATGACAAAAAAGAAAGAATACCTCTTTTGAAGAGAGAGATTATAATGAATGTGGAAGAGTTGCCTGAAGGATATGGTCGTGGATGTTTAGGCAGGGGGTTCTTGACACCTCGACCAGCCATTTTTGTGATTGTTTCGATTGCTGTTTGTCTTGGTGTTTGTGTAGCAGTCCTTCATCCAGGAAGGGTTACTGAGTTAGCAGTATCCGTTAGAAGGTGTTTGTTTAACTATTAG 2295 0.4431 MEPQQSLPPMDDSEDPSSIWDFSYLLDFNLDEDHTNNSLPISSPFDDAPEIPNDRVRKRDPRLTCSNFLAGHVPCACPELDAKLEDEGLPGKKRPRTARASSSARCQVPGCEVDISELKGYHRRHRVCLRCANATTVILHGESKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNTRRRRKPLVDSGCASVSELEAVTQNEENNFDPEAGKDCSNMSNEINDVVVLPDHEDEPVPILRSAPNAQNVNSDSVVSFPVSGETRVNSGNTSNSPSYCDNKSVYTSMCQTGRISFKLYDWNPAEFPRRLRHQIFQWLASMPVELEGYIRPGCTILTSFIAMPEIMWINLRKDSLEYVNELVAPGKMLSGRGTALVHLNGTIFRVMKDGTSVTKVEVNLQAPRLHYVHPICFEAGKPMEFVACGSNLLQPKFRLLVSFSGKYLKCEYCVPSPHNWTEENISCAFDNQLYKIYVPHTEESLFGPAFIEVENECGLSNFIPVLIADKEICSEMKTLQQKLDSSLLSKQFRSASGGSICSSCETFTLSHTSSDLLVDIAWLLKDTTSENFDRVMTASQIQRYCHLLDFLMCNESTVMLKKILPNLIILTESMKSNFLSNRTSYVDTRQLLNHIHDAQISIYQKHQKNGSIIVQPEMESLKLAQGCSQDSKIAVAINSQGILSRPDAEWGVLKNLTCNDKKERIPLLKREIIMNVEELPEGYGRGCLGRGFLTPRPAIFVIVSIAVCLGVCVAVLHPGRVTELAVSVRRCLFNY 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00712 764 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 86 582 IPR044817 GO:0003677
Phco11g00712 764 SUPERFAMILY SBT domain 104 181 IPR036893 GO:0003677|GO:0005634
Phco11g00712 764 Gene3D - 97 167 IPR036893 GO:0003677|GO:0005634
Phco11g00712 764 ProSiteProfiles Zinc finger SBP-type profile. 103 180 IPR004333 GO:0003677
Phco11g00712 764 Pfam SBP domain 106 180 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00712 Phco-Chr11 5100544 5113299 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Phco11g00712 SBP 2e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00712 11 5100544 5113299 Phco11g00712 11 5100544 5113299 ECH