Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00688 ATGGCGAGACCTTCCAAGCCTCACTCATCTTCCGACGAAGCGCTCTCCAATGCTTCAAGTTCTTCAGAGGAAAAGGAGCTGGTCAACGAACAGATCAACGAAGAGGAAGACGAGGAGGAACTCGAGGCGGTGGCACGCTCTGCCAGTTCCGACGAGGATGACGATGAAGGTGCTGCTGGTAATCCTCCAGATTCCGACGAAGATCCCGCCGCCGATGATGACCAGGGTGAGGATAATGTTGATCCGGCAATTAGCAAGCGAGAGAAGGATAGATTAAAGGAAATGCAAAAAATGAAGAAACAGAAAATCCAGGAGATACTGGATGAACAAAATGCGGCCATAGATGCTGACATGAACAACAGAGGAAAAGGGCGTCTGAAGTATCTCTTGCAGCAGACTGAGCTGTTTGCTCATTTTGCAAAAGGTGACCAAACTTCTTCTCAGAAGTCAAGGGGAAGGGGTCGCCATGCATCGAAAGTCACTGAGGAAGAGGAAGATGAAGAATACCTTAAAGAAGAAGAAGATGGTGTAGCCAGCACACGTCTCGTGACACAACCATCATGCATCCAAGGGAAGATGAGGGATTACCAACTGGCTGGACTAAACTGGCTCATACGATTGTATGAGAATGGGATAAATGGAATTCTGGCTGATGAAATGGGGCTTGGTAAAACATTGCAAACCATATCTTTATTAGGTTATTTGCACGAGTTCAGAGGAATAAAAGGCCCTCATATGGTGGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAAATTCGGCGCTTTTGTCCTGTTCTTCGTGCAATTAAGTTTCTTGGCAACCCTGATGAAAGGAGACATATAAAAGAGGAACTTCTGGTTGCTGGGAGGTTTGATGTCTGTGTCACAAGTTTTGAAATGGCAATCAAGGAGAAGTCTGTGTTGCGTCGATTTAGTTGGCGCTACATAATTATTGATGAAGCTCATCGAATCAAGAATGAGAATTCCTTGCTGTCGAAAACTATGAGACTCTACAGTACAAACTATCGCCTCCTTATTACTGGCACACCACTTCAGAATAATCTTCATGAACTCTGGTCTCTTCTCAACTTTCTTCTGCCCGAAATTTTTAGTTCTGCTGAAACTTTCGATGAATGGTTTCAAATCTCTGGTGAAAATGACCAACAGGAGGTTGTTCAACAATTACACAAGGTCCTTCGGCCATTTCTCCTTCGAAGGTTGAAATCAGATGTTGAGAAAGGGTTGCCACCTAAAAAGGAAACTATTCTTAAAGTAGGCATGTCCCAGATGCAGAAACAGTATTATAGAGCATTACTTCAGAAGGATCTTGAGGTTGTAAATGCTGGTGGTGAACGGAAACGCCTCCTGAACATAGCTATGCAACTACGCAAATGTTGTAATCATCCATATCTTTTCCAAGGTGCTGAACCTGGCCCTCCCTACACAACAGGAGATCATCTCATTACAAATGCTGGTAAAATGGTTCTTTTGGATAAGTTACTTCCTAAATTGAAAGAGCGTGATTCCAGGGTCCTTATATTTTCTCAGATGACAAGGCTGCTAGACATACTTGAAGATTATTTAATGTTTCGTGGATATCAATATTGTCGCATTGATGGAAATACTGGCGGTGATGATCGAGATGCTTCCATTGATGCTTTCAACAAACCAGGAAGTGAGAAATTTGTCTTCCTATTATCTACTCGCGCTGGCGGTCTTGGTATTAATCTTGCTACTGCTGATGTTGTCATTCTGTATGACAGTGACTGGAATCCACAAGTTGACTTGCAGGCTCAGGATCGTGCTCATAGGATTGGTCAAAAGAAGGAAGTTCAAGTTTTCCGTTTTTGTACTGAGTATACAATTGAAGAAAAAGTCATTGAAAGGGCCTACAAAAAGCTGGCACTGGATGCTTTGGTGATTCAGCAAGGGAGATTAGCTGAGCAGAAGACGGTAAATAAAGATGAGTTGCTTCAAATGGTTAGATTTGGGGCTGAAATGGTTTTCAGTTCCAAGGATAGTACAATTACAGATGAGGATATTGATAGAATTATTGCTAAAGGAGAGGAGGCAACTGCTGAGCTTGATGCCAAGATGAAGAAATTTACTGAAGATGCCATCAAATTTAAGATGGATGACACTGCTGAGTTATATGATTTTGATGATGAGAAGGACGAGAACAGATTTGATATTAAAAAAATTGTTAGTGAGAACTGGATTGAACCACCGAAAAGGGAGCGGAAGCGCAACTACTCAGAGTCTGAATACTTCAAGCAAACAATGCGTCAAGGTGGTCCTACTAAACCAAAAGAGCCTCGTATTCCTAGGATGCCCCAGTTGCATGATTTCCAGTTTTTCAACACACAGAGGTTGAGTGAACTGTACGAAAAGGAAGTTCGCTATCTCATGCAAGCTCACCAGAAGAATCAGATAAAGGACTCAATAGATGTTGATGAACCAGAAGAGGTGGGAGATCCATTAACCGCTGAAGAATTGGAGGAAAAGGAGCGCTTGCTAGAAGAGGGATTTTCATCTTGGAGCCGGAGGGATTTTAATACTTTCATTAGGGCCTGCGAAAAATATGGCAGAAATGATATAAAAAGTATTGCTTCTGAGATGGAAGGAAAAACTGAGGAGGAAGTTGAAAGATATGCGAAGGTCTTCAAAGAAAGATACAAGGAATTAAATGATTATGACAGAATTATTAAAAACATTGAAAGGGGGGAGGCAAGAATTTCTCGGAAAGATGAGATCATGAAAGCTATTGGGAAAAAGTTGGACCGCTACAAGAATCCTTGGCTAGAGTTAAAGATTCAGTATGGGCAAAACAAAGGGAAGTTGTACAATGAAGAATGTGACAGATTCATGATATGCATGGTTCACAAACTTGGCTATGGGAATTGGGATGAGTTAAAGGCGGCATTTCGAACTTCACCCTTGTTTCGATTTGATTGGTTTGTTAAGTCACGTACAACTCAGGAACTGGCAAGAAGGTGTGACACCCTCATTCGTCTGGTAGAAAAGGAAAACCAAGAATACGATGAGAGGGAAAGACAAGCTCGCAAAGAGAAGAAACTTGCTAAAAACATGACCCCATCAAAGCGTGCTTTGGCAAGACAGACAGAGAGTCCATCTTTGAAGAAGCGGAAGCAGTTAACCATGGATGATTACGCAAGCACGGGGAAGAGAAGAAAATAA 3204 0.421 MARPSKPHSSSDEALSNASSSSEEKELVNEQINEEEDEEELEAVARSASSDEDDDEGAAGNPPDSDEDPAADDDQGEDNVDPAISKREKDRLKEMQKMKKQKIQEILDEQNAAIDADMNNRGKGRLKYLLQQTELFAHFAKGDQTSSQKSRGRGRHASKVTEEEEDEEYLKEEEDGVASTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPVLRAIKFLGNPDERRHIKEELLVAGRFDVCVTSFEMAIKEKSVLRRFSWRYIIIDEAHRIKNENSLLSKTMRLYSTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDEKDENRFDIKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQAHQKNQIKDSIDVDEPEEVGDPLTAEELEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEYDERERQARKEKKLAKNMTPSKRALARQTESPSLKKRKQLTMDDYASTGKRRK 1067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00688 1067 CDD SANT 847 891 IPR001005 -
Phco11g00688 1067 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 205 370 IPR014001 -
Phco11g00688 1067 MobiDBLite consensus disorder prediction 54 78 - -
Phco11g00688 1067 Pfam HAND 757 839 IPR015194 GO:0003677|GO:0006338|GO:0031491
Phco11g00688 1067 Pfam SNF2-related domain 206 473 IPR000330 GO:0005524|GO:0140658
Phco11g00688 1067 Gene3D - 844 898 - -
Phco11g00688 1067 FunFam ISWI chromatin-remodeling complex ATPase CHR11 745 843 - -
Phco11g00688 1067 Gene3D - 414 706 IPR027417 -
Phco11g00688 1067 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 408 IPR027417 -
Phco11g00688 1067 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 92 1051 - -
Phco11g00688 1067 MobiDBLite consensus disorder prediction 1016 1032 - -
Phco11g00688 1067 Gene3D ISWI, HAND domain 745 843 IPR036306 GO:0003677|GO:0006338|GO:0031491
Phco11g00688 1067 CDD DEXHc_SMARCA1_SMARCA5 190 410 IPR044754 GO:0005524
Phco11g00688 1067 MobiDBLite consensus disorder prediction 1 97 - -
Phco11g00688 1067 MobiDBLite consensus disorder prediction 1016 1067 - -
Phco11g00688 1067 MobiDBLite consensus disorder prediction 9 26 - -
Phco11g00688 1067 Gene3D - 194 409 IPR038718 -
Phco11g00688 1067 Pfam SLIDE 901 1011 IPR015195 GO:0003677|GO:0005634|GO:0006338
Phco11g00688 1067 Gene3D - 932 1035 - -
Phco11g00688 1067 SMART ultradead3 189 381 IPR014001 -
Phco11g00688 1067 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 844 898 - -
Phco11g00688 1067 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 756 846 IPR036306 GO:0003677|GO:0006338|GO:0031491
Phco11g00688 1067 FunFam Chromatin-remodeling complex ATPase 194 409 - -
Phco11g00688 1067 Coils Coil 1001 1032 - -
Phco11g00688 1067 Coils Coil 18 42 - -
Phco11g00688 1067 FunFam ISWI chromatin-remodeling complex ATPase CHR11 932 1035 - -
Phco11g00688 1067 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 498 649 IPR001650 -
Phco11g00688 1067 CDD SF2_C_SNF 494 619 - -
Phco11g00688 1067 Pfam Helicase conserved C-terminal domain 496 608 IPR001650 -
Phco11g00688 1067 Gene3D iswi atpase 899 931 - -
Phco11g00688 1067 SUPERFAMILY Homeodomain-like 899 1021 IPR009057 -
Phco11g00688 1067 ProSiteProfiles SANT domain profile. 843 895 IPR017884 -
Phco11g00688 1067 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 410 691 IPR027417 -
Phco11g00688 1067 FunFam ISWI chromatin-remodeling complex ATPase CHR11 414 706 - -
Phco11g00688 1067 MobiDBLite consensus disorder prediction 79 97 - -
Phco11g00688 1067 SMART sant 946 1007 IPR001005 -
Phco11g00688 1067 SMART sant 844 893 IPR001005 -
Phco11g00688 1067 Coils Coil 85 112 - -
Phco11g00688 1067 SMART helicmild6 524 608 IPR001650 -
Phco11g00688 1067 MobiDBLite consensus disorder prediction 141 173 - -
Phco11g00688 1067 MobiDBLite consensus disorder prediction 1043 1067 - -
Phco11g00688 1067 SUPERFAMILY Homeodomain-like 847 897 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00688 Phco-Chr11 4920165 4929549 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phco11g00688 SNF2_N 1.1e-71 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00688 11 4920165 4929549 Phco11g00688 11 4920165 4929549 ECH
Phco8g02277 8 24582807 24608298 Phco11g00688 11 4920165 4929549 PCT