Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00686 ATGGGTGGGTGTTTTCCTTGTTTTGGATCATCCAACAAGGAGGACAGTGGTGGGGTGAGGGTCAAGGAGGTGCCCAACAAGGATTCTTCTTTTAAGGAAGCTGCTTCTCTTGTTCCTCAGTCTCATCACCCCAGCAGGGCAAACACAGATAAATCGAAATCATCACGGAGTGGCACAGATGCTAAGAAGGAAACGTTGGTTCCAAAGGATGGCCCAACGCCCCATATTGCTGCACAAACATTTACATTCCGAGAGCTTGCAGCTGCTACAAAGAACTTTAGGCCAGAATGTTTATTAGGTGAAGGAGGTTTTGGACGCGTTTACAAAGGTCGCCTCGAGAGCACAGGACAAGCAGTTGCTGTAAAACAGCTAGACCGAAATGGTCTTCAAGGAAATCGAGAATTTTTGGTGGAAGTTCTCATGCTTAGTCTCTTGCATCATCCGAATCTTGTGAACTTAATTGGTTATTGTGCAGATGGTGATCAGCGGCTGCTTGTTTATGAATTTATGCCATTGGGGTCTTTGGAGGATCATTTACACGATCTTCCTCCTGACAAGGAGCCTCTGGATTGGAACACTAGGATGAAAATAGCAGCTGGAGCTGCAAAGGGATTGGAATACTTGCATGACAAGGCAAATCCACCAGTGATATATAGAGACTTAAAATCATCCAACATTCTTCTAGACGAGGGTTACCATCCCAAGTTATCAGATTTTGGGCTGGCAAAACTGGGTCCAGTTGGCGACAAGACTCATGTATCCACACGAGTAATGGGAACATACGGCTATTGTGCCCCAGAATATGCTATGACTGGTCAATTAACTCTGAAATCTGATGTCTACAGTTTTGGAGTTGTCTTCCTTGAACTTATTACTGGGCGCAAGGCTATTGACAATACACGTGCTCATGGAGAGCACAATCTTGTTGCATGGGCACGGCCTCTCTTCAAGGACCGTAGGAAGTTCCCCAAAATGGCTGACCCTCTACTTCAAGGCCGTTACCCGATGCGTGGACTGTATCAAGCACTTGCAGTTGCTGCAATGTGTCTACAGGAGCAAGCTGCTACAAGGCCTCTCATTGGGGATGTGGTGACTGCTCTCTCATATCTGGCCTCACAGACATATGATCCAAATGCAGCCAATCAATCCAACAGGGTTGGCCCCTCAACCCCTAGGATGAGGGATGACAGAAGGAGCCTGGCAGATGGCGTGGACAGCCCTGATCGGCGCCTCGGCTCCCCTTCCACGCACAGAAACTCCCCTGACTTTAGGAAGAGAGACAGCAGGGATCCAAGCAGCGGGACTGAGTTAGGCAGGATGGATACGGGTGGTGGCTCAGGGAGGAAATGGGGATTGGATGATTATGAAAGGCAGGAGTCTCAGAGAGACAGCCCTGTAAATACTGCAAGAGCCAGAGAGACTCCATGGAACCGCGACCTGGACCGAGAGCGTGCAGTTGCCGAAGCAAAAGTCTGGGGCGAGAATTGGAGAGAGAAGAAGAAAGCAAATGCCATGGGTAGCTTCGATACTACAAATGACTGA 1542 0.4864 MGGCFPCFGSSNKEDSGGVRVKEVPNKDSSFKEAASLVPQSHHPSRANTDKSKSSRSGTDAKKETLVPKDGPTPHIAAQTFTFRELAAATKNFRPECLLGEGGFGRVYKGRLESTGQAVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRAHGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALSYLASQTYDPNAANQSNRVGPSTPRMRDDRRSLADGVDSPDRRLGSPSTHRNSPDFRKRDSRDPSSGTELGRMDTGGGSGRKWGLDDYERQESQRDSPVNTARARETPWNRDLDRERAVAEAKVWGENWREKKKANAMGSFDTTND 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00686 513 MobiDBLite consensus disorder prediction 377 483 - -
Phco11g00686 513 SUPERFAMILY Protein kinase-like (PK-like) 74 367 IPR011009 -
Phco11g00686 513 MobiDBLite consensus disorder prediction 419 434 - -
Phco11g00686 513 Pfam Protein kinase domain 98 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00686 513 CDD STKc_IRAK 99 367 - -
Phco11g00686 513 FunFam Serine/threonine-protein kinase PBS1 170 385 - -
Phco11g00686 513 ProSiteProfiles Protein kinase domain profile. 93 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00686 513 MobiDBLite consensus disorder prediction 1 71 - -
Phco11g00686 513 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Phco11g00686 513 SMART serkin_6 93 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00686 513 ProSitePatterns Protein kinases ATP-binding region signature. 99 122 IPR017441 GO:0005524
Phco11g00686 513 MobiDBLite consensus disorder prediction 46 69 - -
Phco11g00686 513 Gene3D Phosphorylase Kinase; domain 1 77 169 - -
Phco11g00686 513 FunFam Serine/threonine-protein kinase PBS1 66 169 - -
Phco11g00686 513 MobiDBLite consensus disorder prediction 390 405 - -
Phco11g00686 513 PANTHER OS07G0668900 PROTEIN 35 379 - -
Phco11g00686 513 Gene3D Transferase(Phosphotransferase) domain 1 170 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00686 Phco-Chr11 4908844 4914768 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Phco11g00686 Pkinase 7.1e-46 CL0016