Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00622 ATGAGACTTTCTTCAGCTGGTTTTAGTCCTCCACCTCAGGAAGGGGAAAGGCGAGTTCTAGATTCAGAGCTTTGGCATGCATGTGCTGGTCCCCTTGTCTCTTTACCAGCAGTTGGAAGCCGCGTGGTATACTTTCCACAAGGTCACAGTGAACAAGTGGCTGTCTCGACGAACAAGGAAATAGATGCTCATATCCCAAACTACCCAAGCTTACCTCCTCAACTCATTTGTCAACTTCATAACATGACCATGCATGCTGATGCAGAGACTGATGAAGTGTATGCACAGATGACCTTGCAACCTCTGAATCCTCAAGAGCAAAAGGAGGCATACCTTCCAGCGGAGTTGGGCACTCCTAGTAAACAGCCAACCAACTATTTCTGCAAAACTTTGACTGCAAGTGACACAAGCACTCATGGGGGATTCTCTGTACCTCGCCGTGCAGCTGAAAAAGTGTTCCCAGCATTGGATTTCTCTCAGCAGCCTCCTGCTCAAGAATTAATTGCAAGGGATTTGCACGGTAATGAATGGAAATTCAGACATATCTTCCGGGGCCAGCCCAAAAGGCATCTGCTTACAACTGGATGGAGTGTCTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCTGTGCTGTTTATCTGGAATGAGAAGAACCAACTTCTTCTTGGCATCCGTCGTGCTAATCGGCCGCAAACTGTGATGCCTTCTTCAGTGTTGTCAAGTGATAGTATGCACTTGGGGCTTCTTGCTGCAGCAGCTCATGCAGCTGCAACAAATAGTCGTTTCACCATTTTCTATAACCCACGTGCTAGCCCATCTGAATTTGTCATACCCTTAGCGAAGTACGTTAAAGCTGTGTATCATACTCGAGTTTCAGTTGGTATGCGGTTTAGGATGCTGTTTGAAACTGAGGAATCAGGTGTACGACGATACATGGGTACAATAACTGGCATTAGTGACCTGGATCCTGCCCGGTGGCCAAACTCACACTGGCGCTCAGTTAAGGTTGGTTGGGATGAATCTACGGCTGGAGAGAGACAACCTAGAGTGTCTTTATGGGAAATTGAGCCACTAACTACATTTCCTATGTATCCATCTCCATTCCCCCTTAGGCTTAAACGACCATGGCCGCCAGGACTGCCTTCATTCCACGGCATGAAGGATGATGATTTTGGCCTGAATTCATCTCTCTTGTGGCTCCGAGACAGTGATAGAGGGCTTCAGTCTCCCACTTTTCAGGGGATTGGTGTTAATCCTTGGATGCATCCTAGATTTGATCCCTCCATGTTGAATATGCAAACAGATATGTATCAAGCTGCTGCTGTTCAGGAGATGAGGGGTTTGGATCCTTCCAAACAGCATACTGCTTCCATACTTCAATTTCAGCAACCGCAGAACTTCCCAAACAGGACAGCTGCCTTTGTGCAGGCCCAGATGTTGCAGCAGACACAACATCAGCAGATTTTTGGAAATAATCAAGAGAATCAGCATTCACCACAATCTCATCTGCAAACTCAGGCTCATCTTCAGCAACAATTACAACATCCGCACTCATTCAATAGTCAGCATCATCACCAGCACCAGCAACAACAACTACGACAGACACAGCAGCAACAGCAACAAGTTGTAGATAATCAGCAAATTTCTAGTGCAGTTTCTTCAATGTCTCAGTTTGTTTCAGCTCCTCCACCTCAATCACCACCTATGCAAGCAATCTCTTCCTTGTGCCAACAGCAAAATTTTTCTGATTCAAATGGGAACTCTGTGCCTACTATTGTTTCTCCCCTGCACAGTATCCTGGGTTCATTTCCGCAGGATGAAACATCTCACCTCCTGAACCTTCCTAGGACAAGCTCTTGGATTCCTGTTCAAAATTCATCTGGGTGGCCCTCAAAGCGTGTTGCAGTGGATCCTCTTATTTCTTCCGGAGTCTCCCAATGTGTTCTACCTCAGGTGGAGCAGCTAGGGCAGCCCCAAAGTACTGTGTCTCAAAATGCTATTACTTTACCACCTTTTCCTGGTAGGGAATGCTCCATAGACCAAGAAGGGAGCAATGATCCACAAAACCATCTCCTATTTGGTGTTAATATAGATCCCTCATCCCTTCTCATGCCTAATGGAATGTCAAACCTTAAGGGGGTTAGCAGCAACAATGACTCCTCAACCTTGCCATATCAATCTTCTAATTATATGAATACCACCACAGGCACTGATTCTTCATTGAACCATGGAATAACACCCAGTATTGGCGGTGAATCAGGTTACCTGCAGAGTCCAGAAAATGCTGGACAAGGAAACCCACTGAACAAAACCTTTGTGAAGGTTTATAAGTCAGGGTCCTTTGGAAGGTCATTGGATATCACTAAATTCAGCAGCTACCATGAGCTGCGAAGTGAACTTGCTCAAATGTTTGGCCTTGAAGGCGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTTGTAGACCGAGAGAACGATGTGCTTCTCCTTGGTGATGGCCCCTGGCCGGAATTCGTAAATAGCGTATGGTGCATAAAGATACTTTCTCCTCAGGAAGTGCAGCAAATGGGGAACTCTGGTCTTGAACTCTTGAACTCGGTTCCAATTCAAAGGCTCTCTAATGGCATCTGTGATGACTATGTGAGCCGTCAAGACCCAAGAAATTTAAGCCCTGGAATAACAGCTGTCGGGTCTTTAGACTACTGA 2715 0.4611 MRLSSAGFSPPPQEGERRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNKEIDAHIPNYPSLPPQLICQLHNMTMHADAETDEVYAQMTLQPLNPQEQKEAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPALDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESGVRRYMGTITGISDLDPARWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFHGMKDDDFGLNSSLLWLRDSDRGLQSPTFQGIGVNPWMHPRFDPSMLNMQTDMYQAAAVQEMRGLDPSKQHTASILQFQQPQNFPNRTAAFVQAQMLQQTQHQQIFGNNQENQHSPQSHLQTQAHLQQQLQHPHSFNSQHHHQHQQQQLRQTQQQQQQVVDNQQISSAVSSMSQFVSAPPPQSPPMQAISSLCQQQNFSDSNGNSVPTIVSPLHSILGSFPQDETSHLLNLPRTSSWIPVQNSSGWPSKRVAVDPLISSGVSQCVLPQVEQLGQPQSTVSQNAITLPPFPGRECSIDQEGSNDPQNHLLFGVNIDPSSLLMPNGMSNLKGVSSNNDSSTLPYQSSNYMNTTTGTDSSLNHGITPSIGGESGYLQSPENAGQGNPLNKTFVKVYKSGSFGRSLDITKFSSYHELRSELAQMFGLEGELEDPVRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQMGNSGLELLNSVPIQRLSNGICDDYVSRQDPRNLSPGITAVGSLDY 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00622 904 MobiDBLite consensus disorder prediction 493 547 - -
Phco11g00622 904 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Phco11g00622 904 ProSiteProfiles PB1 domain profile. 771 855 IPR000270 GO:0005515
Phco11g00622 904 FunFam Auxin response factor 291 363 - -
Phco11g00622 904 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Phco11g00622 904 FunFam Auxin response factor 125 229 - -
Phco11g00622 904 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Phco11g00622 904 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Phco11g00622 904 Pfam AUX/IAA family 763 856 IPR033389 -
Phco11g00622 904 MobiDBLite consensus disorder prediction 735 764 - -
Phco11g00622 904 Gene3D - 291 363 - -
Phco11g00622 904 Gene3D - 125 228 IPR015300 -
Phco11g00622 904 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 860 IPR044835 GO:0003677|GO:0006355|GO:0009725
Phco11g00622 904 FunFam Auxin response factor 767 860 - -
Phco11g00622 904 SUPERFAMILY CAD & PB1 domains 770 846 - -
Phco11g00622 904 SMART B3_2 127 229 IPR003340 GO:0003677
Phco11g00622 904 CDD B3_DNA 126 227 IPR003340 GO:0003677
Phco11g00622 904 Gene3D - 768 860 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00622 Phco-Chr11 4336701 4342425 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Phco11g00622 AUX_IAA 2.1e-07 CL0072