Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00593 ATGGCTTTTCCAAACCCATCCATGTCAGTTTCCCCACAGAGGAAGATGGGAAGGGGGAAGATTGAGATCAAGAGGATTGAGAACACCACCAATCGCCAAGTCACCTTCTGCAAGCGCAGAAATGGCTTGCTCAAGAAAGCATATGAATTATCTGTGCTTTGTGATGCAGAGGTTGCTCTAATCGTCTTCTCTAGCCGTGGCCGTCTCTATGAATACGCTAATAACAGTGTCAAAGCAACTATTGAGAGGTACAAAAAAGCATGTTCAGATTCGTCTGGTGCTGGATCTGCTTCTGAGGCTAATGCTCAGTTTTACCAGCAAGAAGCAGATAAACTACGTGCACAAATAAGTAACATGCAGAATAACAACAGGCAAATGATGGGCGAGTCTTTGGGCTCTATGACTGCCAAGGATCTAAAAAACCTGGAGAGTAAACTAGAAAAAGGAATAAGTAGGATTCGTTCAAAAAAGAACGAGCTGCTATTTGCTGAAATTGAGTACATGCAGAAGAGGGAGATAGATTTGCACAACAATAACCAGCTTCTTCGAGCAAAGATAGCTGAAAGTGAGAGGAGCCAGAATATGGGTGTGTTGGCTGGAGGCACAAGCTATGAGTCTGTGCAGTCTCAGCAGGCATTTGACTCTCGTGGCTACTTCCAAGTCACTGGATTACAACCCAATAATCAGTATGCCCGACAAGATCAGATGTCCCTTCAATTAGTGTAA 726 0.4394 MAFPNPSMSVSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSGAGSASEANAQFYQQEADKLRAQISNMQNNNRQMMGESLGSMTAKDLKNLESKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAESERSQNMGVLAGGTSYESVQSQQAFDSRGYFQVTGLQPNNQYARQDQMSLQLV 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00593 241 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Phco11g00593 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Phco11g00593 241 CDD MADS_MEF2_like 17 86 IPR033896 GO:0000977|GO:0045944
Phco11g00593 241 SUPERFAMILY SRF-like 17 88 IPR036879 GO:0003677|GO:0046983
Phco11g00593 241 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Phco11g00593 241 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Phco11g00593 241 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Phco11g00593 241 ProSiteProfiles K-box domain profile. 102 192 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco11g00593 241 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Phco11g00593 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 16 194 - -
Phco11g00593 241 Coils Coil 139 159 - -
Phco11g00593 241 Coils Coil 102 129 - -
Phco11g00593 241 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Phco11g00593 241 Gene3D - 28 94 IPR036879 GO:0003677|GO:0046983
Phco11g00593 241 FunFam agamous-like MADS-box protein AGL11 28 111 - -
Phco11g00593 241 Pfam K-box region 100 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00593 Phco-Chr11 4140057 4147498 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phco11g00593 K-box 5.8e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00593 11 4140057 4147498 Phco11g00593 11 4140057 4147498 ECH
Phco4g02770 4 49065299 49071257 Phco11g00593 11 4140057 4147498 PCT