Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00583 ATGGGAGTTGCCAATTTCTTTGTCTTCCTTTTTGTTGCTCTAAGTTGCTTCCAATTGCTGAGAGTTTCTGCATCAAAATTACCCCAAGAAGAAGCTGATGCCCTCAGAGAAATTGCGAGTGCGATGGGTTCGGCATACTGGAAATTTGATGCAGATTCCTGCAGTATTGAAATGGTTGGACTAACGCAAGAGCCACCAGCTGAATCAGAGAGAAGCATTGGTTGTGACTGCAGTTTTGAAGACAATACTGTCTGTCATGTTGTGAAGATGACTCTCAAGCGCCTTAGTCTACCTGGCACACTCCCACCTCAACTGGCCAAGCTACCTTTTCTCCGAGAAGTAGATTTTGCTTTCAATTGCTTCACCGGTTCGATTCCAGAGGAATGGGCTTCAATGAAATTAGCTTCAATTTCTCTTCTTGTGAATCGCTTATCTGGGGAAATTCCAAAGCATCTAGGAAATTTTACCTCTCTTACATACCTGATGCTTGAAGCAAACCAATTTTCTGGTGCTGTTCCACCGGAGCTTGGGAAACTAATTAACTTGCAGACATTGGTTCTGTCATCCAATCAATTGACTGGGAACTTACCTCTTACACTGGCTGGACTACAAAATTTGACTGACTTTAGAATAAATGATAACAATTTTACTGGAACAATACCTAGTTTCATACAGAGCTGGCAACTTCTCCAAAGACTAGAAATGCATGCAAGTGGACTAGAGGGACCCTTCCCATCAAATATCTCTCTCTTGAAGAACTTAGTTATGCTAAGAATCAGTGATATAGAAAGTCCTGCCCAGGTCTTTCCACATCTGGAAAACATGGCAAACTTGAATGTATTGGTTCTAAGGAGTTGTAACTTATTTGGTGTTATACCTTCATACGTCTGGACAATGAGGAATTTGGCGGTTCTGGATGTCAGTTTTAACATGCTCGTTGGAGAAATTTCATCAATTATAAGTGCAAGGCGTCTGAGATTTATCTACCTAACAGGTAACATGCTTAGTGGCAATATACCGAATTCAATCCTGAAGGATGGAAGTAGCATTGATCTATCATACAACAACTTTACATGGCAAGACGAAACTTCTTGTAAGGATGGCATGAATTTGAATCTGAATCTGTTCAGAAGCTCGATTCGAAAGAATAAGTTAGAGGAGTATGTTCCTTGCTCCAAGAATTTCAGCTGTTCACGGTTTTCAAGATGTTTACATGTTAACTGTGGTGGGAAGGATGTAAGTGTTAAAGATGATAAAGGAGAAAACCTTTATGTGGGAGACGAAGATGTTCAGGGTGGCACTGCAACTTATTTCTACAGTAATGATCACTGGGGATTTAGTAGCACCGGGGACTTCATGGATGATTTTGAGTCCCAGAACGTACGTTACATTGTATCTCTGCCATCTTCAAATATGCCAGAATTATATAAAACGGCGCGTGTATCTCCAATTATACTTACTTATTTCCACAACTGCATGGAAAATGGGAACTATACTGTAAACCTTCACTTTGCTGAGATACAGTTTACAAATGATAAAACATATAAAAGTCTTGGGAAGCGCATATTTGATATCTATGTTCAGGGAAGAAGGGCTCGCAAAAATTTTAATATAGAGAATGAGACAAATGTTACTGAAAAACCACTGGTACTGCCAATACACAATATCAGAATCACAAATAATGTCTTGGAGATCAGATTCTACTGGGCTGGAAAAGGAACGACTAGAATTCCTGATGTTGGAGTTTATGGTCCCCTTGTATCTGCTATATCTGTGGTTTCAGATTCTAGAATTTGCTCAAATGGAGAAAAGAAAGTTGTTGGTTCGATAATCATTGCCACCGTAGCCGGTGCTCTATGCTCAGTGCTATTTATATCTGGACTCATTTGGTGGAAGTGGAAAGGCTTTTTCAGAGGGAAACTGCAAAAGAAAGAAGGTGCAAAAGATGGAGATATTCAGGCGGGTAATTTTAGCTTGGAGCATATCAGAGCTGCCACCAATGACTTCTCTTCTGCTAATAAGATTGGAGAAGGCGGTTTTGGTCCCGTATATAAGGTTTCTGGTAACCTGGATGCGACAATGCAGGGTGAATTGCTAGATGGTACTTTTATAGCGGTCAAGCAATTGTCATCACAATCACGGCAGGGAAATCGTGAATTTATAAATGAAATAGGCTTGATATCTTGTGTGCAACACCCCAACCTCGTAAAGCTTCATGGATATTGTGCTGAAGGGGAACAACTTTTGTTGGTATATGAGTACATGGAAAATAACAGCCTTGCCCGAGCTTTATTTGGTAGTGAGAACCGTCAGCTTAAATTGGATTGGCCCACAAGGTTTAGGATTTGCATTGGCATAGCAAAAGGTCTAGCATTTCTCCATGATGAGTCAAGATTCAAGATAGTACACAGAGATATCAAGGCTTCTAATGTGTTACTCGATGGCGATTTGAATCCAAAAATATCTGACTTTGGCTTGGCTAGGCTTGATGAAGCAGAGAAGACCCATATCAGCACCCGAGTTGCTGGAACTATAGGATATATGGCACCAGAATATGCATTATGGGGCCATCTTACATACAAAGCCGATGTTTACAGTTTTGGAGTTGTAGCATTAGAAATTGTTAGTGGGAAAAGCAATAACAATTATTTACCAGACGATGGAAGTGCTTGTCTTTTGGATTGGGCATGTCAATTAAATCAAGCTAAGAAATTAGTGGGGCTTGTTGATGAAAGGTTGGGACCAGACCTTAATAAAACAGAAGTAGAAAAGGTGGTCAGAATAGCTCTCCTGTGCATAAATGTTTCTCTATCACTTAGGCCTACGATGTCTGAGGTGGTGAATATGCTTGAAGGACAATTAGATATTCCTGATGCAATCCCAGAACCAAGTACCTACTGTGAGGATTTAAGGTTCAAAGCCTTAAGGGATCTCAATGAACATCGATCAAAGCAGAGTTTGAGTGTAAACCAGAGCCAGAATTCATCAACTCATACATTGAGCTCAGCATCTGCTAGTAATACTCACACTAGTAGTAATATTGAGGATTATTGTTCAGTTGACAATAGTTACTTACCCCTGTCAACAACTCGGATACACACCAGTTAA 3108 0.4025 MGVANFFVFLFVALSCFQLLRVSASKLPQEEADALREIASAMGSAYWKFDADSCSIEMVGLTQEPPAESERSIGCDCSFEDNTVCHVVKMTLKRLSLPGTLPPQLAKLPFLREVDFAFNCFTGSIPEEWASMKLASISLLVNRLSGEIPKHLGNFTSLTYLMLEANQFSGAVPPELGKLINLQTLVLSSNQLTGNLPLTLAGLQNLTDFRINDNNFTGTIPSFIQSWQLLQRLEMHASGLEGPFPSNISLLKNLVMLRISDIESPAQVFPHLENMANLNVLVLRSCNLFGVIPSYVWTMRNLAVLDVSFNMLVGEISSIISARRLRFIYLTGNMLSGNIPNSILKDGSSIDLSYNNFTWQDETSCKDGMNLNLNLFRSSIRKNKLEEYVPCSKNFSCSRFSRCLHVNCGGKDVSVKDDKGENLYVGDEDVQGGTATYFYSNDHWGFSSTGDFMDDFESQNVRYIVSLPSSNMPELYKTARVSPIILTYFHNCMENGNYTVNLHFAEIQFTNDKTYKSLGKRIFDIYVQGRRARKNFNIENETNVTEKPLVLPIHNIRITNNVLEIRFYWAGKGTTRIPDVGVYGPLVSAISVVSDSRICSNGEKKVVGSIIIATVAGALCSVLFISGLIWWKWKGFFRGKLQKKEGAKDGDIQAGNFSLEHIRAATNDFSSANKIGEGGFGPVYKVSGNLDATMQGELLDGTFIAVKQLSSQSRQGNREFINEIGLISCVQHPNLVKLHGYCAEGEQLLLVYEYMENNSLARALFGSENRQLKLDWPTRFRICIGIAKGLAFLHDESRFKIVHRDIKASNVLLDGDLNPKISDFGLARLDEAEKTHISTRVAGTIGYMAPEYALWGHLTYKADVYSFGVVALEIVSGKSNNNYLPDDGSACLLDWACQLNQAKKLVGLVDERLGPDLNKTEVEKVVRIALLCINVSLSLRPTMSEVVNMLEGQLDIPDAIPEPSTYCEDLRFKALRDLNEHRSKQSLSVNQSQNSSTHTLSSASASNTHTSSNIEDYCSVDNSYLPLSTTRIHTS 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00583 1035 Pfam Malectin domain 403 590 IPR021720 -
Phco11g00583 1035 Gene3D Transferase(Phosphotransferase) domain 1 755 958 - -
Phco11g00583 1035 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 401 595 - -
Phco11g00583 1035 ProSitePatterns Serine/Threonine protein kinases active-site signature. 801 813 IPR008271 GO:0004672|GO:0006468
Phco11g00583 1035 Gene3D Ribonuclease Inhibitor 31 195 IPR032675 -
Phco11g00583 1035 Gene3D Ribonuclease Inhibitor 196 264 IPR032675 -
Phco11g00583 1035 Gene3D - 402 597 - -
Phco11g00583 1035 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 14 992 - -
Phco11g00583 1035 CDD STKc_IRAK 675 952 - -
Phco11g00583 1035 Pfam Protein tyrosine and serine/threonine kinase 672 950 IPR001245 GO:0004672|GO:0006468
Phco11g00583 1035 SUPERFAMILY L domain-like 83 342 - -
Phco11g00583 1035 Gene3D Ribonuclease Inhibitor 265 388 IPR032675 -
Phco11g00583 1035 MobiDBLite consensus disorder prediction 983 1012 - -
Phco11g00583 1035 FunFam Putative LRR receptor-like serine/threonine-protein kinase 755 962 - -
Phco11g00583 1035 MobiDBLite consensus disorder prediction 984 1012 - -
Phco11g00583 1035 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 33 196 - -
Phco11g00583 1035 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 638 754 - -
Phco11g00583 1035 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 197 263 - -
Phco11g00583 1035 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 265 384 - -
Phco11g00583 1035 SMART serkin_6 669 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00583 1035 SUPERFAMILY Protein kinase-like (PK-like) 654 972 IPR011009 -
Phco11g00583 1035 ProSiteProfiles Protein kinase domain profile. 669 954 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00583 1035 Gene3D Phosphorylase Kinase; domain 1 638 754 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00583 Phco-Chr11 4046694 4056371 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco11g00583 PK_Tyr_Ser-Thr 6.4e-45 CL0016