Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00570 ATGATGGAGGAAGCTCAGGGCAATTCTAGTTCCTTGCCTCCTTTCCTCAGCAAGACTTATGACATGGTTGATGATCCTTCAACCAATTCCATTGTTTCCTGGAGTGTCACCAATAAGAGTTTCGTTGTTTGGAACCCACCAGAGTTTTCAAAGGATTTGTTACCCAGATTCTTTAAGCACAGTAACTTCTCCAGTTTTATCAGGCAGCTCAACACTTACGGGTTTAGAAAGATTGATCCTGAACTATGGGAATTTGCGAATGAGGGTTTTGTGAGAGGTCAGCCACATCTTTTAAAGAATATTCATAGGCGCAAACCTGTTCATAGCCATTCTTTGCAGAATATTCAGGTTCAGGGGTCTTCTCCACTGACAAAATCAGAAAGGCAGAGTTTCAAGGAGGAGATACTGAAGCTTAAAGATGAAAAAGATCAAATTCTTCGGGAGTTGGAGAGGCATGAACAGGAGTGGAAAATGTATGAGGTACAACTACAATACTCAAATGATCGATTGGAACAGTTGGAAAAGAAGCAAGAAAATTTGGTTTCTTCTGTTTCTGAAGTGCTGCAGAAACCTGGGATTGCCTTAAATCTCTTGCCACTGACAGAAAACGGGGATAGAAAACGTAGGTTGCCAAGAAGTGGTCTCTTCAGTGATGATGCTAGCATTGAAGATCATATGGAAACTTCCTCTATATTACCTGGGGTAAATGCTGAGGGTGCCTCTATTTTCGCACCGAACATGGAGCGATTTGATATACTCGAGTCATCTATTATGTTTTGGGAGAACATTTCACATGATGTCCAAAGTCACATGAACATGGATTTGGATGAAACAACAAGTTGTGCAGATAGTCCAGCTATATCTTCTGTCCAGCTGGAGGTTGAAGTTCAGCCTAAATCACCTGGAATCAACGTGAATTCTGAGTCAGCTGTAGCGGCTGTTCCTGATCTTGATGCATCAAAAGAGTCACCAGTGGGAACAGTTCCTGCGGCTACTGGTGTTAATGATATATTCTGGGAACGGTTCTTGACAGAGAATCCTGGTTCTGAGAATCAGGAAGTGCATTCTGAAAGGAAAGATTCTGATGGCAGAAGCAATGCCAAATTTTGGTGGAACATTAGGAATGTAAATAACCCTCCAGAACAGATGGGGCATTCTTAG 1161 0.4203 MMEEAQGNSSSLPPFLSKTYDMVDDPSTNSIVSWSVTNKSFVVWNPPEFSKDLLPRFFKHSNFSSFIRQLNTYGFRKIDPELWEFANEGFVRGQPHLLKNIHRRKPVHSHSLQNIQVQGSSPLTKSERQSFKEEILKLKDEKDQILRELERHEQEWKMYEVQLQYSNDRLEQLEKKQENLVSSVSEVLQKPGIALNLLPLTENGDRKRRLPRSGLFSDDASIEDHMETSSILPGVNAEGASIFAPNMERFDILESSIMFWENISHDVQSHMNMDLDETTSCADSPAISSVQLEVEVQPKSPGINVNSESAVAAVPDLDASKESPVGTVPAATGVNDIFWERFLTENPGSENQEVHSERKDSDGRSNAKFWWNIRNVNNPPEQMGHS 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00570 386 Coils Coil 128 162 - -
Phco11g00570 386 MobiDBLite consensus disorder prediction 351 365 - -
Phco11g00570 386 Coils Coil 170 190 - -
Phco11g00570 386 ProSitePatterns HSF-type DNA-binding domain signature. 54 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco11g00570 386 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 6 227 IPR027725 -
Phco11g00570 386 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco11g00570 386 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco11g00570 386 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco11g00570 386 SUPERFAMILY "Winged helix" DNA-binding domain 10 104 IPR036390 -
Phco11g00570 386 Gene3D - 7 105 IPR036388 -
Phco11g00570 386 FunFam Heat shock transcription factor 1 8 105 - -
Phco11g00570 386 SMART hsfneu3 11 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco11g00570 386 MobiDBLite consensus disorder prediction 345 368 - -
Phco11g00570 386 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00570 Phco-Chr11 3946736 3948035 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Phco11g00570 HSF_DNA-bind 4.4e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00570 11 3946736 3948035 Phco11g00570 11 3946736 3948035 ECH
Phco11g00570 11 3946736 3948035 Phco4g02757 4 48938349 48939685 ECH
Phco4g02757 4 48938349 48939685 Phco11g00570 11 3946736 3948035 PCT