Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00569 ATGAAGAGGGGAGGAAGAAAGCATTCTTTAACTTCCTCTTCTTCTGGCTCTTCCTTCATTTCTCATGCATCTCCTTTCTCTTGGTTATCCAAGTTCAAGAACATGAGAATCAATTCAGAGCCAAGTGCTGCAAAAAGGAAGCCCAAGGCCAAGCCCAGTGGTTCACCAAAATATTTTTGTGAGATTGGAGATAGATGTTGTGTAAAGGATGATGGTGATTTCTGTAGACAACCTTTAAATGAAGAAAGTTGTGAGGATAAGAAGAATAAAGATATTGATGAGAGTGTCTTTCCCTCCTTAAGTTGTCTTGGTGGAACAAGGGATTCTAAGAAACATGGAAAGAAAGGCACACTGGAGTTAAAGGAGAGGGATATTGGTCAAGGAGAAGAAAGAAAGTCGTTGAATGATGGAAGGGTTTCAAAGGAGATGGATGTGTACAATAGAGAAAAGGAATATGAAAACTTAAGGAGGAGATTTGAGAGCAAAGCGAAAAAGGCTTTTCAAGACCAACTCTTGACATTAGGAAGAGAAATGGAGGAACTTAAGTTTGGATCCAGTAAAGCAGTGGAAAAAGATGTGTTGCAATTTGAATCACCTAGAACAATTTGCACCCCAAGAACACATGCTTTTTCCTCTTCAGCAATTTCAAGGAATCCCATCCTTGGAGATATTATAGAAAATTTTGAGAAAACTGAAAAGCAACCTCACAAGAAAATGAGTTCGGAGAGGCAGAACTTGAAACAAACTGAGGAGATGAAGGTAAAGACTAACAGGAAGAAGCTATCACATCATCTCAGCAGAGAACACCAGAGGAGGAAACCAAAGCCGAGCTCTAGGCTCCAAATACATTCTCCAAGGATGGTTTCTAAGGTTGAAATTTGCAAAATAAAGGCCTTGGAAGACATGAAGAAAGCAAAACTAAAGATGAAGAAAGAAAGGGAGGAGATTGTGGAGGAAATACCAGGATTAGAGAGCTTTGCTGTGATTAAGTCTTCAATAGACCCAAAGCAAGATTTCAGAGATTCAATGATTGAGATGATCATAGAGAATCAGATTATTGAGCCAGAAGAAATGGAAGATCTTTTGGCATGTTATCTGACTTTGAATGCAGATGAGTATCATGATCTCATCATCAAAGTGTTCAGGAAGGTATGGTTTGACATTAGCCAAGGTATTTTGGGTATTAAACTAAATATGCAATGTGGTTACTATTGA 1215 0.386 MKRGGRKHSLTSSSSGSSFISHASPFSWLSKFKNMRINSEPSAAKRKPKAKPSGSPKYFCEIGDRCCVKDDGDFCRQPLNEESCEDKKNKDIDESVFPSLSCLGGTRDSKKHGKKGTLELKERDIGQGEERKSLNDGRVSKEMDVYNREKEYENLRRRFESKAKKAFQDQLLTLGREMEELKFGSSKAVEKDVLQFESPRTICTPRTHAFSSSAISRNPILGDIIENFEKTEKQPHKKMSSERQNLKQTEEMKVKTNRKKLSHHLSREHQRRKPKPSSRLQIHSPRMVSKVEICKIKALEDMKKAKLKMKKEREEIVEEIPGLESFAVIKSSIDPKQDFRDSMIEMIIENQIIEPEEMEDLLACYLTLNADEYHDLIIKVFRKVWFDISQGILGIKLNMQCGYY 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00569 404 MobiDBLite consensus disorder prediction 258 279 - -
Phco11g00569 404 ProSiteProfiles OVATE domain profile. 328 387 IPR006458 -
Phco11g00569 404 MobiDBLite consensus disorder prediction 230 281 - -
Phco11g00569 404 MobiDBLite consensus disorder prediction 1 22 - -
Phco11g00569 404 Pfam Transcriptional repressor, ovate 332 388 IPR006458 -
Phco11g00569 404 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 213 389 IPR038933 GO:0045892
Phco11g00569 404 MobiDBLite consensus disorder prediction 107 141 - -
Phco11g00569 404 MobiDBLite consensus disorder prediction 230 257 - -
Phco11g00569 404 Coils Coil 239 259 - -
Phco11g00569 404 MobiDBLite consensus disorder prediction 39 60 - -
Phco11g00569 404 NCBIfam uncharacterized plant-specific domain TIGR01568 326 388 IPR006458 -
Phco11g00569 404 MobiDBLite consensus disorder prediction 8 22 - -
Phco11g00569 404 Coils Coil 295 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00569 Phco-Chr11 3939676 3940890 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Phco11g00569 Ovate 2e-23 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00569 11 3939676 3940890 Phco11g00569 11 3939676 3940890 ECH
Phco4g02756 4 48930251 48931450 Phco11g00569 11 3939676 3940890 PCT