Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00540 ATGTTGCTATCTGATCATAGCCTTGAAGCTAAACACTGTAGTCATGCCAAAGTGGGTGCTTGTCTCGTTTCCCTCTTTCTGTGCTACTGGGTGCTTCTTGTTGAGGGCACTGATAGCCTTCTCTCTCCAAAGGGTGTCAACTATGAAGTGGCTGCTTTGATGTCCTTGAAGAGTAAGATGTATGGTGAGTTTCATGTTATGGATGGTTGGGATATTAATTCGGTTGACCCTTGCACTTGGTACATGGTCGGTTGCTCTGCCGAGGGCTATGTCGTTTCCCTGGAAATGGCCAGTGCGGGTTTATCCGGAACTATTTCCTCAGGAATTGGAAATTTGAGCCACCTCCATACATTGTTATTGCAGAACAATAAGTTATCTGGTCCTATTCCAACTGAGATAGGAAAGCTGTTAGAGCTTCAAACCCTTGACCTTTCTGGTAACCAGCTCGATGGGGAAATTCCTAATTCTTTGGGCTTTTTGACTCATCTGAGTTACTTGCGGCTCAGCAAAAATAAACTATCTGGACAGATCCCTCAGCTTGTTGCTAATCTCACTGAACTTTCATTCTTGGACTTGTCATTCAATAATCTCAGTGGTCCCACTCCGAAAATTTTAGCGAAAGGTTATAGTATTTCAGGAAACAGCTTCCTCTGCACCTCTCCCTCTCAAATTTGTATGGGCTTCTCAAAACCAGTTAATGATACAGGGTCATCTCAGTCGACTGGTGGTCATCACCATAGGGTGCTTGCTGTTGTTATTGGCTTTAGTTGCACATTTGTAATTTCAGTGGTGCTTCTTGTCTTTTGGTTGCATTGGTACAGATCAAACATTCTCTACACATCTTATGTGGAGCAAGATTGTGAATTTGATATTGGCCATCTGAAGAGGTTCTCCTTCCGTGAATTGCAAATTGCTACTGGAAATTTCAATTCAAAAAATATCCTAGGGCAAGGTGGTTTTGGTGTTGTCTACAAAGGATGCCTTGCAAATAAAATGTTAGTGGCAGTAAAGAGGTTGAAAGATCCCAACTATACTGGAGAAGTGCAGTTTCAAACAGAAGTTGAGATGATTGGCTTGGCCGTGCATCGAAACCTCTTGCGTCTTTATGGATTCTGTATGACACCGGATGAAAGGTTACTTGTTTATCCTTACATGCCCAATGGCAGTGTTGCTGATCGCTTGAGAGAGACTTGCCGTGAAAAGCCGTCATTGGACTGGAACAGGCGAATGCGCGTTGCTCTTGGGGCAGCACGCGGGCTTCTATACCTGCATGAACAATGCAATCCAAAAATAATCCATAGGGATGTTAAGGCTGCAAACATTTTGTTAGATGAAAGTTTTGAAGCTGTGGTGGGGGATTTTGGTCTTGCTAAGCTCTTAGATCAAAGGGATTCACATGTAACTACTGCAGTCCGAGGTACAGTAGGTCACATTGCTCCAGAATATCTCTCAACTGGACAGTCTTCTGAAAAAACAGATGTTTTTGGATTTGGCATATTACTTTTGGAGCTCATAACAGGACACAAGGCACTTGATGCTGGAAATGCTCAGGTCCAAAAGGGAATGATTCTTGATTGGGTTAGAACCTTATCTGAGGAGAAGCGGCTGGAAGTGTTAGTGGATAGGGATCTGAGGGGATGTTTTGATCCAGTAGAGTTAGAGAAAGCAGTGGATTTGTCTCTGCAGTGTACTCAGTCACTTCCCACTTTGCGGCCGAAGATGTCAGAAGTTCTGAAGATTCTAGAAGGTCTGGTAGGGCAGTTAGTGCGGGCAGAAGAGTCACAAGGGGGGACTAACCTATATGGTGAAAGGACTTGCAGTTTCTCACAAAATTATAGTGATGTTCATGAAGAACCTTCCTTTATTATTGAAGCCATTGAGCTTTCTGGACCTCGGTGA 1899 0.4355 MLLSDHSLEAKHCSHAKVGACLVSLFLCYWVLLVEGTDSLLSPKGVNYEVAALMSLKSKMYGEFHVMDGWDINSVDPCTWYMVGCSAEGYVVSLEMASAGLSGTISSGIGNLSHLHTLLLQNNKLSGPIPTEIGKLLELQTLDLSGNQLDGEIPNSLGFLTHLSYLRLSKNKLSGQIPQLVANLTELSFLDLSFNNLSGPTPKILAKGYSISGNSFLCTSPSQICMGFSKPVNDTGSSQSTGGHHHRVLAVVIGFSCTFVISVVLLVFWLHWYRSNILYTSYVEQDCEFDIGHLKRFSFRELQIATGNFNSKNILGQGGFGVVYKGCLANKMLVAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTPDERLLVYPYMPNGSVADRLRETCREKPSLDWNRRMRVALGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKLLDQRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGHKALDAGNAQVQKGMILDWVRTLSEEKRLEVLVDRDLRGCFDPVELEKAVDLSLQCTQSLPTLRPKMSEVLKILEGLVGQLVRAEESQGGTNLYGERTCSFSQNYSDVHEEPSFIIEAIELSGPR 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00540 632 Pfam Leucine rich repeat N-terminal domain 47 86 IPR013210 -
Phco11g00540 632 FunFam Somatic embryogenesis receptor kinase 1 279 384 - -
Phco11g00540 632 Pfam Protein kinase domain 310 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00540 632 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 24 580 - -
Phco11g00540 632 FunFam Somatic embryogenesis receptor-like kinase 1 385 599 - -
Phco11g00540 632 Gene3D Ribonuclease Inhibitor 46 226 IPR032675 -
Phco11g00540 632 ProSiteProfiles Protein kinase domain profile. 309 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00540 632 ProSitePatterns Serine/Threonine protein kinases active-site signature. 431 443 IPR008271 GO:0004672|GO:0006468
Phco11g00540 632 ProSitePatterns Protein kinases ATP-binding region signature. 315 337 IPR017441 GO:0005524
Phco11g00540 632 SUPERFAMILY L domain-like 48 222 - -
Phco11g00540 632 Gene3D Phosphorylase Kinase; domain 1 279 384 - -
Phco11g00540 632 SUPERFAMILY Protein kinase-like (PK-like) 293 587 IPR011009 -
Phco11g00540 632 PRINTS Leucine-rich repeat signature 139 152 - -
Phco11g00540 632 PRINTS Leucine-rich repeat signature 184 197 - -
Phco11g00540 632 SMART serkin_6 309 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00540 632 FunFam Putative LRR receptor-like serine/threonine-protein kinase 46 227 - -
Phco11g00540 632 Gene3D Transferase(Phosphotransferase) domain 1 385 591 - -
Phco11g00540 632 ProSiteProfiles Leucine-rich repeat profile. 138 161 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00540 Phco-Chr11 3733591 3739379 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Phco11g00540 Pkinase 4.3e-44 CL0016