LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco11g00539	ATGGCTGAGGATAAGGAGATGTCCTCCTCTGTCATCAATGGCAATGATTCCCTCACTGGTCACATCATATCTACAACTATTGGAGGCAAAAACGGGGAGCCCAAACAGACTATTAGTTACAAGGCCGAACGAGTTGTAGGAACTGGCTCATTTGGAATTGTTTTCCAGGCAAAATGCTTGGAAACTGGGGAGGCAGTGGCAATTAAAAAGGTTTTACAGGACAGAAGATACAAGAACCGTGAACTGCAGTTAATGCGTGTTTTGGATCATCCAAATGTGATCTCACTGAAGCATTGTTTCTTTTCAACTACAAGTACAGATGAACTTTTTCTAAATTTGGTGATGGAATATGTTCCAGAGTCTATGTATAGAGTCTTAAAGCACTATAGCAATGCTAATCAAAGAATGCCAATCATCTATGTGAAACTTTACATGTACCAGATTTTTAGGGGATTGGCTTATATCCACACTGTTCCCAAAGTTTGCCACAGAGACTTGAAGCCTCAAAATATTCTGGTGGATCCTCTTACACACCAAGTGAAGCTATGTGATTTTGGAAGTGCCAAAGTTCTAGTAAAAGGTGAAGCTAATATATCATACATATGTTCACGATACTATCGTGCCCCAGAACTTATATTTGGTGCCACAGAGTATACAGCTTCAATTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAACTTCTTCTTGGCCAGCCATTATTCCCTGGAGAAAATGCAGTAGACCAGCTTGTACATATTATAAAGGTGCTTGGCACACCAACTCGAGAGGAAGTACGCTGTATGAATCCCAACTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGATATTCCACAAAAAGATGCCTCCAGAAGCTATTGATCTTGCATCTCGGCTTTTGCAATACTCCCCAAGTCTCCGGTGTTCTGCGCTTGAAGCATGTGTACATCCTTTCTTTGATGAACTTCGAGAACACAATGCTCGCCTGCCAAATGGCCGTCCATTTCCTCCCTTATTTAACTTCAAACATGAATTAACCGGAGCATCTGCAGAGCTTGTTAACAAGTTGATACCTGACCATGTGAAGCGGCAAATAGGGATACAATTTGTCCATCCAACAGGATCATGA	1143	0.4173	MAEDKEMSSSVINGNDSLTGHIISTTIGGKNGEPKQTISYKAERVVGTGSFGIVFQAKCLETGEAVAIKKVLQDRRYKNRELQLMRVLDHPNVISLKHCFFSTTSTDELFLNLVMEYVPESMYRVLKHYSNANQRMPIIYVKLYMYQIFRGLAYIHTVPKVCHRDLKPQNILVDPLTHQVKLCDFGSAKVLVKGEANISYICSRYYRAPELIFGATEYTASIDIWSAGCVLAELLLGQPLFPGENAVDQLVHIIKVLGTPTREEVRCMNPNYNDFRFPQIKAHPWHKIFHKKMPPEAIDLASRLLQYSPSLRCSALEACVHPFFDELREHNARLPNGRPFPPLFNFKHELTGASAELVNKLIPDHVKRQIGIQFVHPTGS	380

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco11g00539	380	FunFam	Shaggy-related protein kinase kappa	120	367	-	-
	Phco11g00539	380	SUPERFAMILY	Protein kinase-like (PK-like)	39	348	IPR011009	-
	Phco11g00539	380	CDD	STKc_GSK3	35	327	IPR039192	-
	Phco11g00539	380	PANTHER	GLYCOGEN SYNTHASE KINASE-3 ALPHA	5	369	-	-
	Phco11g00539	380	SMART	serkin_6	40	324	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phco11g00539	380	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	161	173	IPR008271	GO:0004672\|GO:0006468
	Phco11g00539	380	Gene3D	Phosphorylase Kinase; domain 1	25	119	-	-
	Phco11g00539	380	FunFam	Glycogen synthase kinase-3 beta	24	119	-	-
	Phco11g00539	380	Gene3D	Transferase(Phosphotransferase) domain 1	120	367	-	-
	Phco11g00539	380	ProSiteProfiles	Protein kinase domain profile.	40	324	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phco11g00539	380	Pfam	Protein kinase domain	40	324	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phco11g00539	380	ProSitePatterns	Protein kinases ATP-binding region signature.	46	70	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco11g00539	Phco-Chr11	3729182	3733130	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_GSK	Phco11g00539		Pkinase	1.3e-64	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco11g00539	11	3729182	3733130	Phco4g02730	4	48688080	48694261	PCT