Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00537 ATGAATCCCCTCCCCACGTTCTTCATTCTCCTTTTACTGGTTGCGCTCGTGGATTCTAAATATTATTCTTGCAAAAATGAAGACCAGGAGCTGGTGTCAAAGGCGTTTAAATCTGTGTCTGGATTCAACTCTTCCTGGTTCCAGAGCGCTTCTAATTGTTCAAATGCTGATGTTATTAAAGGACTCAATCTTTCGTTCAAGAATCTAAGTGGAAGCATTTCGTGGAAGTATCTGCGGAACATGTCCAAGTTGGAGGTTCTAGATCTGTCCGGGAATTTCCTGCAAGGACAGGTACCAAACTGGTTGTGGACAAGTTCAACCTTATTGGTAGTGAACCTTTCCCAGAACAGGTTCGGAGGGAGCATTAACCCCACTTCCCAAAACGGTTCCTTTTCATCGATGAAAAATCTCAATCTCTCATACAACAGGTTCACCAACCAGCTTCACCTCTCTGGTTTTTCAAACCTTAAAAGCCTAGACCTTTCGCACAACAACCTCAGAACTTTACCTTTGGGGTTCCAAAACCTCACCAATCTACACCAACTTAATCTCTCCAACTGCAACATCAAAGGCAGCGTAAAACCCATTTCTTCCCTAACCTCGCTGTCCTTCTTGGACCTTTCAAACAACTCTTTGAACGGTAGCTTCCCCTCGGATTTCCCTCCCCTGAACACCATAAAATTCTTGAACATCTCCCACAACAACTTCAAGGCATCCACCAAATTAGACAGATTCAGAAAGTTCGGGAAGTCGGCGTTCATTCACGCTGGCAACAACTTCAGCTACACCGCATCCAAAACGCCAAAGCTAGGTGCAACCTCAACATCAGTTTCAACTTCAAAACCACCACACGAACAGTCCCACCATATTCAGGCGGAGAAGAAGAGGCGGAGAGAAAAACAAAAGTCAAAACAGAAACCGAGAAGCATGATTGCAGCCTTGTCGTGTGGCTCGACACTGGTGGTTGTCGGATTGTGCATGTGCGTGGTGTGGCGTTGCAGAAGGAAGAGGCAATTGGCGAAAAGGAACAAGTGGGCGATCTCGAAGCCGGTCCCAGTGAGCATGAAGATAGAAAAGTCGGGACCGTTCGCGTTCGAGACAGAGTCAGGGACATCATGGGTGGCTGACCTGAAAGAACCCTCTTCCGCACCCGTGGTGATGTTCGAGAAGCCTCTCATGAACCTCACCTTCGTGGACCTAATAGCTGCCACGTCACACTTTGGCAAAGACTCTCTCCTTGCTGAGGGCAGATGTGGGCCCGTGTACCGCGCTGTCTTAACAGGAGAAATCCACGTGGCAATCAAAGTCATCGAAAACGCCAGAGACGTCCATCATGATGACGCTGTCGCTCTCTTCGTTGACCTTTCCCAACTGAAACACCCCAATCTCTTGCCCCTCTCTGGTTACTGTATTGCAGGGAGGGAGAAGCTGGTGTTGTACGAGTTTATGTCGAACGGAGATTTGGGTAGGTGGTTGCAGGAGCTACCAGCGGGGGAGACTAACGTCGAGGATTGGAGTGGTGACACGTGGGAGATTGTTCAAAACGGCGCCGTTTCTCGAGCCTCGCCCCCGGAAAAGATGGCCTGGCCCTTACGCCACCGTATTGCGGTGGGCGTGGCGCGTGGATTGGCGTTTCTGCACCACGCGGGTTCCAGGCCCGTCGTGCACGGCCATCTCGTCACCTCCAACGTCCTTATCGGCGACGACTTCGAGCCGCGAATCGCGGATTTCGGGTTCCGGAGGTTCGGAAGGGAGAGCGCCGCCGCCACGGCGAATTGCTCGACAGAGACGGATGTTTATTGCTTCGGTGTGGTGCTGATGGAGCTTCTGACGGGGAGGGGCGGCACGGCGGAGACGGTTGTTTGGGTGAGGAAGGCAGTGAGGGAGGGACACGCGGTGAGGGCGTTGGATGAGAGGCTCAAACTCAGCGGCGGAGGCGACTCGGAGAATGAAATGGTGGAGAGCCTCCGAGTGGCGTATTTGTGTACGGCGGAGTCACCCGGGAAGAGGCCCACCATGCAGCAGGTATTGGGCCTGCTGAAAGATATTCACCCGAGTCACGGAGTCGATTGA 2073 0.5191 MNPLPTFFILLLLVALVDSKYYSCKNEDQELVSKAFKSVSGFNSSWFQSASNCSNADVIKGLNLSFKNLSGSISWKYLRNMSKLEVLDLSGNFLQGQVPNWLWTSSTLLVVNLSQNRFGGSINPTSQNGSFSSMKNLNLSYNRFTNQLHLSGFSNLKSLDLSHNNLRTLPLGFQNLTNLHQLNLSNCNIKGSVKPISSLTSLSFLDLSNNSLNGSFPSDFPPLNTIKFLNISHNNFKASTKLDRFRKFGKSAFIHAGNNFSYTASKTPKLGATSTSVSTSKPPHEQSHHIQAEKKRRREKQKSKQKPRSMIAALSCGSTLVVVGLCMCVVWRCRRKRQLAKRNKWAISKPVPVSMKIEKSGPFAFETESGTSWVADLKEPSSAPVVMFEKPLMNLTFVDLIAATSHFGKDSLLAEGRCGPVYRAVLTGEIHVAIKVIENARDVHHDDAVALFVDLSQLKHPNLLPLSGYCIAGREKLVLYEFMSNGDLGRWLQELPAGETNVEDWSGDTWEIVQNGAVSRASPPEKMAWPLRHRIAVGVARGLAFLHHAGSRPVVHGHLVTSNVLIGDDFEPRIADFGFRRFGRESAAATANCSTETDVYCFGVVLMELLTGRGGTAETVVWVRKAVREGHAVRALDERLKLSGGGDSENEMVESLRVAYLCTAESPGKRPTMQQVLGLLKDIHPSHGVD 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00537 690 PRINTS Leucine-rich repeat signature 156 169 - -
Phco11g00537 690 PRINTS Leucine-rich repeat signature 199 212 - -
Phco11g00537 690 MobiDBLite consensus disorder prediction 271 308 - -
Phco11g00537 690 SUPERFAMILY Protein kinase-like (PK-like) 384 680 IPR011009 -
Phco11g00537 690 Pfam Leucine Rich Repeat 83 101 IPR001611 GO:0005515
Phco11g00537 690 FunFam Putative LRR receptor-like serine/threonine-protein kinase 368 482 - -
Phco11g00537 690 Gene3D Phosphorylase Kinase; domain 1 367 482 - -
Phco11g00537 690 ProSiteProfiles Protein kinase domain profile. 407 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00537 690 Gene3D Transferase(Phosphotransferase) domain 1 515 688 - -
Phco11g00537 690 ProSiteProfiles Leucine-rich repeat profile. 155 177 IPR001611 GO:0005515
Phco11g00537 690 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 51 683 - -
Phco11g00537 690 Pfam Leucine rich repeat 133 189 IPR001611 GO:0005515
Phco11g00537 690 Gene3D Ribonuclease Inhibitor 30 128 IPR032675 -
Phco11g00537 690 SMART LRR_typ_2 81 105 IPR003591 -
Phco11g00537 690 SMART LRR_typ_2 153 175 IPR003591 -
Phco11g00537 690 SMART LRR_typ_2 199 222 IPR003591 -
Phco11g00537 690 Gene3D Ribonuclease Inhibitor 129 312 IPR032675 -
Phco11g00537 690 Pfam Protein tyrosine and serine/threonine kinase 411 583 IPR001245 GO:0004672|GO:0006468
Phco11g00537 690 FunFam Calmodulin-binding receptor kinase CaMRLK 132 242 - -
Phco11g00537 690 SUPERFAMILY L domain-like 52 239 - -
Phco11g00537 690 MobiDBLite consensus disorder prediction 271 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00537 Phco-Chr11 3713340 3715697 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Phco11g00537 PK_Tyr_Ser-Thr 1.9e-23 CL0016