Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00535 ATGGAGAAAAATGTTCTGATGCAAAAGTATGAGATTGGACGTTTCCTTGGACAAGGAAATTTCGCCAAAGTTTACCATGCAAAGAACTTGAAGACTGGTCAGAGCGTGGCCGTGAAAGTTATCAACAAAGAGATGATGATGAAGGTGGGTATGACGGAGCAAATCAAGCGTGAAATCTCAGTGATGCGCCTTGTGAGGCACCCCAACATTGTGCAGCTGCATGAGGTCATGGCAACCAAGAAAAAGATATATTTTGCAATTGAATTGGTGAAAGGTGGTGAACTTTTTGATAAGGTGTCCAGAGGGAGGTTGAGGGAGGATGTAGCAAGAAAATATTTTCAGCAGCTGATTGATGCTGTTGATTACTGCCACAGCCTAGGGGTGTGTCATCGTGATCTCAAGCCAGAGAACCTTCTTGTTGATGAAAATGGGGACCTCAAAATTACAGATTTTGGTTTGAGCGCCTTGGTTGAATCCAGGAAGAACAATGGCCTTCTTCACACAATATGTGGAACTCCAGCCTATGTAGCTCCTGAGGTGATAAAGAAGAAAGGATATGATGGAGCCAAGGCAGATATATGGTCTTGTGGGGTGATTCTATATGTTCTTTTGGCAGGTTTTGTTCCTTTCAGTGATAAAAATTTGATGGAGATGTATAAGAAGATTATCAAAGCAGATTGCCAATTCCCAAAATGGTTCTCTCCAGATGTAAAAAGACTTATTTATAGGATCCTTGATCCGAATCCAACGAGGAGAATTACTGTTGCTAAGATTGTGCAAAGTCGTTGGTTTAGAAAGGGGTATGTGCAGATTGAAGAATTTCAGCTGCCACCATTGTTCCCTAGAAATGGTGATGATATCTTGGATGTTCAGGTTGCATTTGATTCATCAGATTCAGATGGCAGTCCAATGTCAATTAAAGAAGAAAGCCCCCAGAAGCTATATCAATTCAATGCATTTGATTTGATATCACTATCATCAGGTCTTGATCTTTCTGGTTTGTTTGAAAATGATCAGAATGAAAGACAACTGACGAGATTTACTACAAGAGAAACACCTTCAACTGTTGTATCAATGCTTGAAGAGATAGCACAGATAGATGATAAATTTAAAGTCTCTAAGAAAGATGGGGTAGTCAGATTGGAGGGATGCCAGACGGGGATAAAAGGCCAACTCACTCTAGATGCAGAAATTTTTGAAGTTACATCTTCCTTGCATGTTGTCGAGGTGAAAAAAATTGCTGGAAACACATTGGAATATTTCAAATTCAGGGAACAGTACTTGAAACCTTCTCTGAACGAAATAACTTAA 1311 0.3997 MEKNVLMQKYEIGRFLGQGNFAKVYHAKNLKTGQSVAVKVINKEMMMKVGMTEQIKREISVMRLVRHPNIVQLHEVMATKKKIYFAIELVKGGELFDKVSRGRLREDVARKYFQQLIDAVDYCHSLGVCHRDLKPENLLVDENGDLKITDFGLSALVESRKNNGLLHTICGTPAYVAPEVIKKKGYDGAKADIWSCGVILYVLLAGFVPFSDKNLMEMYKKIIKADCQFPKWFSPDVKRLIYRILDPNPTRRITVAKIVQSRWFRKGYVQIEEFQLPPLFPRNGDDILDVQVAFDSSDSDGSPMSIKEESPQKLYQFNAFDLISLSSGLDLSGLFENDQNERQLTRFTTRETPSTVVSMLEEIAQIDDKFKVSKKDGVVRLEGCQTGIKGQLTLDAEIFEVTSSLHVVEVKKIAGNTLEYFKFREQYLKPSLNEIT 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00535 436 SMART serkin_6 10 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00535 436 ProSiteProfiles NAF domain profile. 312 336 IPR018451 GO:0007165
Phco11g00535 436 Gene3D Transferase(Phosphotransferase) domain 1 1 316 - -
Phco11g00535 436 ProSiteProfiles Protein kinase domain profile. 10 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00535 436 Pfam NAF domain 317 374 IPR004041 GO:0007165
Phco11g00535 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Phco11g00535 436 Pfam Protein kinase domain 10 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00535 436 CDD STKc_SnRK3 9 263 - -
Phco11g00535 436 CDD CIPK_C 318 433 - -
Phco11g00535 436 FunFam Non-specific serine/threonine protein kinase 312 436 - -
Phco11g00535 436 SUPERFAMILY Protein kinase-like (PK-like) 6 317 IPR011009 -
Phco11g00535 436 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Phco11g00535 436 FunFam Non-specific serine/threonine protein kinase 3 305 - -
Phco11g00535 436 FunFam Non-specific serine/threonine protein kinase 1 89 - -
Phco11g00535 436 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 3 420 - -
Phco11g00535 436 Gene3D Kinase associated domain 1, KA1 317 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00535 Phco-Chr11 3689517 3690827 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Phco11g00535 Pkinase 2.1e-77 CL0016