Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00533 ATGGAACCAAGATTGAACACATTTGGATTTTGTCTAAGAATTTATATTTGCTTGATCTCAGTGTGGGGAATCCGAGATTGTTGCTCTGTTAATGATGAAGGACTGGCTTTGTTAGCCTTCCAAGAGAGAATAACTTTTGATCCCTTTAATGCTTTGGTGAATTGGAATCCCAATGATTGTGACCCTTGCATGTGGTTCGGTGTTCATTGTGTAGATGGTAAAGTGCAAGTGTTGGACTTAAAAGGGTTATCATTGGAAGGGACATTGGCCCCTGAGCTTGGCAAACTTAGTCACCTAAGTTCTATTGTATTATGCAAGAATAACTTTTCTGGTGCCATTCCCAAAGAACTTGGAGATTTACGCCAGCTAGAGTTATTAGATTTAAGGGAAAATAATTTGTCAGGAAACATCCCAGAAGAAATTGGCAACATGTCATTATTAAAACACTTTGTGTGGCAACGGAACTTCAACCAATGGTACAAATCAGATTCATTGATTATTCTAACCAAAGCAACACTTACGAAATTTGCCAATAATGCCTTTGTTTGGCCACTATTCAAGCTAGGGAAGAGTGCCTCTCATGGCCATAGAGAGGATTATTGTGACATTCTGCCTAGTTCTAATGTGCTAAAGATAGCCCGAAATGTACCAGAGTTTGTTTGTTCTGCACGTCGTAAGTTACTTCAGTCTAGTGGTAGTAACCTTGCAGCTGCACCTTTCAGTGACAAACCAACAATAGAGTTTAGTTCTGCTCCAACTACCTTCAGTAGTGGAGCTGTTCCTGCTTTCCCAGATCCGCATTCTGATGCTCCTGATGATGCTTCTGATGATGCTTCTGAAGAAAATCAATCACACAATACTTTCGATGGAAATCAAACAAGTCAACATGTAAATAATGGTGCTTATAGAAAAATGTGGAAGTTTATAATTACTATTATTCTTCTTGTGCTGGTCATTATTATCATAACTCTTATGTACATTTGGCGAAAACGAGCTGCAAGAGTAATAGGCCCCTGGAAGACAGGAATAAGTGGACAGTTGCAGAGAGCATTTATAACAGGGGTCCCCAAGTTGAATAGAGCAGAGTTAGAGACAGCCTGCGAAGATTTTAGCAATATTGTTGTTAATAGTTATTCCGGGTGCACCATCTACAAAGGAACATTGTCCAGTGGAGTTGAGATTGCTGTAGTTTCTACTCTGATTACTTCTTCTAAAAATTGGTCAAAGAGCATGGAGATGCAATACCGCAAAAAGATTGATACTTTGTCTCGCATAAATCATAAGAACTTTATTAATCTTATTGGGTACTGCGAAGAAGAAGAACCATTCACTAGGATGTTGGTGTTTGAGTATGCTCCAAATGGAAACGTATTTGAGCATTTACATGGTGATGAAATGGAACTTCTTGATTGGAGTGAAAGGATAAAAATTATCATGGGGATTGCGTATTTTCTTCAATACATGCACCATGACTTAAATCCACCTATGGCACAAAGCGAGCTTCTTTCAAATATGATATGTTTAACAGATGATTTTGCTGCTAAGGTTGCAGAAGTTACTTTTAGACAAATTGTGTTACCAGAGGAGTCAGTGTGTGATTCAAAGAAATCTGATGTGTTATCCGAAGATGATTTTCAAACCAATGTTTATGACTTTGGAATGTTATTACTCGAAATCATCTCAGGAAAATTACCTTACTCGGAAAAACATGGCAACCTAGTGGACTGGGCTGCTAAGTACTTAAAGGACCAAACAAGCTTCAAAGACTTGGTCGATCCCATCCTCCAATCTTTCAAGGAGAATGAACTTAATTGCATTTGTGAGGTGATCCAAGATTGTATCCAACCTGATCCAAAGTTAAGAGTAACAATGAGGGACGCGACTTCCAAATTAAGGGAAGTGCTTGGTCTGTCACCTGAGCAAGCTGTCCCAAGACTTTCTCCACTCTGGTGGGCTGAATTGGAGATCTTGTCAGTGGAGGCGACTTAA 1989 0.3922 MEPRLNTFGFCLRIYICLISVWGIRDCCSVNDEGLALLAFQERITFDPFNALVNWNPNDCDPCMWFGVHCVDGKVQVLDLKGLSLEGTLAPELGKLSHLSSIVLCKNNFSGAIPKELGDLRQLELLDLRENNLSGNIPEEIGNMSLLKHFVWQRNFNQWYKSDSLIILTKATLTKFANNAFVWPLFKLGKSASHGHREDYCDILPSSNVLKIARNVPEFVCSARRKLLQSSGSNLAAAPFSDKPTIEFSSAPTTFSSGAVPAFPDPHSDAPDDASDDASEENQSHNTFDGNQTSQHVNNGAYRKMWKFIITIILLVLVIIIITLMYIWRKRAARVIGPWKTGISGQLQRAFITGVPKLNRAELETACEDFSNIVVNSYSGCTIYKGTLSSGVEIAVVSTLITSSKNWSKSMEMQYRKKIDTLSRINHKNFINLIGYCEEEEPFTRMLVFEYAPNGNVFEHLHGDEMELLDWSERIKIIMGIAYFLQYMHHDLNPPMAQSELLSNMICLTDDFAAKVAEVTFRQIVLPEESVCDSKKSDVLSEDDFQTNVYDFGMLLLEIISGKLPYSEKHGNLVDWAAKYLKDQTSFKDLVDPILQSFKENELNCICEVIQDCIQPDPKLRVTMRDATSKLREVLGLSPEQAVPRLSPLWWAELEILSVEAT 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00533 662 Gene3D Ribonuclease Inhibitor 30 201 IPR032675 -
Phco11g00533 662 Gene3D Phosphorylase Kinase; domain 1 343 451 - -
Phco11g00533 662 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Phco11g00533 662 Pfam Protein tyrosine and serine/threonine kinase 383 630 IPR001245 GO:0004672|GO:0006468
Phco11g00533 662 SUPERFAMILY Protein kinase-like (PK-like) 381 630 IPR011009 -
Phco11g00533 662 MobiDBLite consensus disorder prediction 269 283 - -
Phco11g00533 662 PANTHER PROTEIN MALE DISCOVERER 2 14 660 - -
Phco11g00533 662 Gene3D Transferase(Phosphotransferase) domain 1 452 641 - -
Phco11g00533 662 SUPERFAMILY L domain-like 28 167 - -
Phco11g00533 662 FunFam Leucine-rich repeat receptor-like kinase 34 155 - -
Phco11g00533 662 FunFam Inactive receptor-like serine/threonine-protein kinase 342 451 - -
Phco11g00533 662 ProSiteProfiles Protein kinase domain profile. 330 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00533 662 MobiDBLite consensus disorder prediction 260 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00533 Phco-Chr11 3663835 3668343 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Phco11g00533 PK_Tyr_Ser-Thr 2.9e-13 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00533 11 3663835 3668343 Phco11g00533 11 3663835 3668343 ECH