Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00529 ATGTCAGAAGGACATGAGATTCATAGCAATGAGGAAACTTCATCGGGATGTTCCCAGAAATGCTCTTCATTTGACTTGAATGCAGAAGCTTGCAGTGACGATAACACTAACGGTAGTACAGAAGAGGGGTATGAGCTCACAACTGACGAGAATAATATTGAGAAAGTAAAGGATGAGGGAACTTCAGCAAATAATGGAAGTAGCATTTCAAGAGAAGGCAATGAGAGAAGAGGAACGGTGAGACAATATGTTAGATCCAAGATGCCTCGGCTTAGGTGGACTCCTGAACTTCATCATTCATTTATGCATGCTGTTGAAAGACTTGGTGGACAAGAGAGAGCAACACCCAAGTTGGTGCTCCAGCTTATGAATGTGGAAGGACTTAGCATTGCTCACGTCAAGAGCCACTTGCAGATGTATCGAAGCAAGAAACTTGACGAGGTTGGGCAAGTACTAAGTCAAACGGACAGGTCGAATCAAAAGTTACGATCTGTGATACTTCATCAGTCCATGAGTCCTCAACAACATCTTAAGATGGGGAATGGTGGAATCATTCTGGCAACTCAATTCAACAAACATTGTCATTTCCCAAGTCTTATGCAGACCCCCTTCCCCCTATCACGTTCGCATGCAAATGACATCGATTCAAGGCACCAGCAATGGTACATCAATCATCAACATTTTAGAAAACCAATAGCTTCGGGCCAAATTCAACCAAAGGATACACCTACGAGACCAAGCCAACTGCTTGATGAGAAAAGGTGGCTTCCCTTAGAAATTATAAACAATCATCAATCCAAGTTTCAAAAGTTACCTGCCATTGTAGCTCCTAAAAATGGATCACACGCTGTTCAGCCAGCTGAATGGAGCTTTGTGAACAACACAAGCGTCACAGAATATATATCTAACAAACCCAATGAACCTCGCAACTATTCCAGCACTTTAAAGCTAGAATTTGATCCCCCATTTCGGATTAAGAAAGATGAGCAACAATTACCTGATTTGCAACTGAGTTTGAGTTACAGAGTTGCAAGCGATGGTGGCAAGATGGATCATTACAGAGAAACCCAGGAAATTAGCACTAAGCTTTCACTTTCTTAA 1101 0.4205 MSEGHEIHSNEETSSGCSQKCSSFDLNAEACSDDNTNGSTEEGYELTTDENNIEKVKDEGTSANNGSSISREGNERRGTVRQYVRSKMPRLRWTPELHHSFMHAVERLGGQERATPKLVLQLMNVEGLSIAHVKSHLQMYRSKKLDEVGQVLSQTDRSNQKLRSVILHQSMSPQQHLKMGNGGIILATQFNKHCHFPSLMQTPFPLSRSHANDIDSRHQQWYINHQHFRKPIASGQIQPKDTPTRPSQLLDEKRWLPLEIINNHQSKFQKLPAIVAPKNGSHAVQPAEWSFVNNTSVTEYISNKPNEPRNYSSTLKLEFDPPFRIKKDEQQLPDLQLSLSYRVASDGGKMDHYRETQEISTKLSLS 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00529 366 FunFam Myb family transcription factor 87 145 - -
Phco11g00529 366 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 69 179 IPR046955 GO:0003700
Phco11g00529 366 SUPERFAMILY Homeodomain-like 87 143 IPR009057 -
Phco11g00529 366 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 145 IPR017930 -
Phco11g00529 366 MobiDBLite consensus disorder prediction 32 81 - -
Phco11g00529 366 MobiDBLite consensus disorder prediction 58 73 - -
Phco11g00529 366 Gene3D - 88 145 - -
Phco11g00529 366 MobiDBLite consensus disorder prediction 32 46 - -
Phco11g00529 366 Pfam Myb-like DNA-binding domain 91 141 IPR001005 -
Phco11g00529 366 NCBIfam myb-like DNA-binding domain, SHAQKYF class 89 144 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00529 Phco-Chr11 3639331 3641890 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Phco11g00529 Myb_DNA-binding 3.9e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00529 11 3639331 3641890 Phco11g00529 11 3639331 3641890 ECH
Phco11g00529 11 3639331 3641890 Phco4g02725 4 48621658 48627753 ECH
Phco4g02725 4 48621658 48627753 Phco11g00529 11 3639331 3641890 PCT