Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00520 ATGCCAAACGGAATTTGGAGCCGTCACACACCGCAACCACTCACACACTGGGGGTTCCCCCAACAACACGCGCCCCTCCCCGGCGACCGTACCGTATTATCCCCCACCCTTCCCACTCTTTCGCCTTGCCGTTTCGCTTTCTCTCTCTTCTTTCTCTTTCCGCATTCCCTCTCTCTTTCTCTCTCTTCTTCCCCGAACCCTAATTTCCGTTTTCCGATGCCCGACTTCAACGACTCCATCGCGCCGCCGTCGCGCCCCGTTCCCGTCCGCGAGGACTGCTGGTCCGAGGAGGCTTCTTCCACACTCGTCGAAGCCTGGGGCCGACGCTACCTCGAGCTCAACCGCGGCAACCTCCGCCAGAAGGACTGGCAGGACGTCGCCGACGCCGTCAACGCGCTCCACGGCCACACCAAGAAGACGCACCGCACAGACGTCCAGTGCAAGAATCGCATCGACACCATAAAGAAGAAGTACAAGATCGAGAAGGCTAGGGTTTCGTCCTCCAATGGTACTCTCTCTTCCTCCTGGCCTTTCTACGAACGATTGGATGCTTTGATTGGCCCTAATTTCAACGCCAAGAAACCCCCTTCCTCCTCGCCGTCTCCTTCGCCGCCTGTGGCTCTTCCGCTGCTGCCGCATCGGAAGAACCTTTCTTCCTCGCCTGCAATTGCGGTGACACCGACGGCCGTGGCGCTGCCTCAGAAGCGCTCCGCCGCTGCTGCGGCGATGGACGAGGGTTACTTCAGAAGGAATTACTCCGCTATGGCTGCGGCTGCGGCGGCGGCGGAGGCTGATGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGCGGATGATGTGGAGGAGGAGGAGGACGAAGATGAAGGAAGGGGGAGCGAGGTGGAGGAAGGGGAGAAGGAGAGGGAAGGGATGAGGAGGTTGGCGAAGGCGATAGAGAGGTTTGGGGAAGTGTATGAGAGAGTGGAGGGACAGAAGCTGAGGCAGATGGTGGATTTGGAGAAACAGAGGATGCAATTTGCTAAAGATCTTGAAGTCCAGAGGATGCAGATGTTTATGGACACACAGGTTCAGCTCGAGAGAATTAAGCGCGGGAAACGATCTGGCTCTAACGATATGTATAGCTAG 1122 0.5793 MPNGIWSRHTPQPLTHWGFPQQHAPLPGDRTVLSPTLPTLSPCRFAFSLFFLFPHSLSLSLSSSPNPNFRFPMPDFNDSIAPPSRPVPVREDCWSEEASSTLVEAWGRRYLELNRGNLRQKDWQDVADAVNALHGHTKKTHRTDVQCKNRIDTIKKKYKIEKARVSSSNGTLSSSWPFYERLDALIGPNFNAKKPPSSSPSPSPPVALPLLPHRKNLSSSPAIAVTPTAVALPQKRSAAAAAMDEGYFRRNYSAMAAAAAAAEADEEEEEEEEEEADDVEEEEDEDEGRGSEVEEGEKEREGMRRLAKAIERFGEVYERVEGQKLRQMVDLEKQRMQFAKDLEVQRMQMFMDTQVQLERIKRGKRSGSNDMYS 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00520 373 FunFam trihelix transcription factor ASIL2 94 160 - -
Phco11g00520 373 Coils Coil 252 289 - -
Phco11g00520 373 Pfam Myb/SANT-like DNA-binding domain 91 185 IPR044822 -
Phco11g00520 373 MobiDBLite consensus disorder prediction 262 292 - -
Phco11g00520 373 MobiDBLite consensus disorder prediction 258 303 - -
Phco11g00520 373 MobiDBLite consensus disorder prediction 195 209 - -
Phco11g00520 373 Gene3D - 94 160 - -
Phco11g00520 373 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 68 364 IPR044823 -
Phco11g00520 373 MobiDBLite consensus disorder prediction 190 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00520 Phco-Chr11 3572744 3577576 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Phco11g00520 Myb_DNA-bind_4 8.1e-25 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00520 11 3572744 3577576 Phco11g00520 11 3572744 3577576 ECH