Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00516 ATGGCTGAGGAATCTCAAGGGATTAAGCTGTTTGGCGCAATGATTAAACTGAACAGTGAGGAAGTAAAGAAAGGAGAAAAAGGAAGGGAATACAAGATGGAGGAGAAGAGAACAGAGAAGATAATACCGTGCCCCAGATGCAAGAGCATGGAAACTAAATTCTGTTACTTCAATAACTACAACGTTAATCAGCCAAGGCATTTTTGTAAGAGCTGCCAGAGGTACTGGACTGCTGGTGGGGCCCTCCGAAACGTCGCCGTCGGAGCCGGCCGTCGGAAGGGCAAGCCGTCGTGTCATGGTGGCGGTGAGTTCCCCGATGGGTCTGTCTATGAAAGTTCGGAAGATGAGAACAAGTTTGAGATGGAACATAGGTTGGTTTCGGAAGAGGGTCACAGTAATTTCCGGCAAATTTTTCCGGCGGCCAAGCGGCGGAGGGCTCCATCAGGTGGGTGCTTATCCGTCTCATGCTCGTCTTATCTTATCTTATTTATAAAATTTGGAGGAGTAACTATATTCAGACATCCAATAGCTCAGCACGAGGGTCAATAA 549 0.4754 MAEESQGIKLFGAMIKLNSEEVKKGEKGREYKMEEKRTEKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKSCQRYWTAGGALRNVAVGAGRRKGKPSCHGGGEFPDGSVYESSEDENKFEMEHRLVSEEGHSNFRQIFPAAKRRRAPSGGCLSVSCSSYLILFIKFGGVTIFRHPIAQHEGQ 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00516 182 ProSiteProfiles Zinc finger Dof-type profile. 42 96 IPR003851 GO:0003677|GO:0006355
Phco11g00516 182 PANTHER CYCLIC DOF FACTOR 2 26 97 IPR045174 GO:0003700|GO:0006355
Phco11g00516 182 ProSitePatterns Zinc finger Dof-type signature. 44 80 IPR003851 GO:0003677|GO:0006355
Phco11g00516 182 Pfam Dof domain, zinc finger 40 95 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00516 Phco-Chr11 3518499 3519664 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Phco11g00516 zf-Dof 5.3e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00516 11 3518499 3519664 Phco11g00516 11 3518499 3519664 ECH