Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00473 ATGGCTTCTTCTAATAGACACTGGCCGAGCATGTTCAAGTCTAAGCCCTGCAACCCTCACCACCAATGGCAGCATGACATCAACTCCTCCCTCATCTCAACTGGTTGCCACAGAAGCCCTTACACTTCAGGTACCGGTTGTGAAGAGAGAAGTCCAGAACCAAAGCCAAGGTGGAATCCAAAACCTGAGCAAATTCGCATTCTGGAAGCTATATTCAACTCAGGAATGGTGAATCCTCCCAGAGATGAGATAAGAAAGATAAGGGCACAGTTGCAAGAGTATGGCCAAGTGGGTGATGCAAATGTCTTCTATTGGTTTCAGAACCGCAAATCAAGGAGCAAACACAAGCTTCGACATCTCCAAAACTCAAAGAACCAGAACCTTGAAAATCAACAAAACCCCACTTCTCTCCCTCAAATCACTGCACCATCATCCTCATCTTCCTCCTCTGAGAAATCTTCTCCAAAAGAATTAATTCCGACCAAGGTATTCTCGATTGGATTCTCTAACGTCACCGATGTCGTACCAAATTCTCCAACTACTTCTGTGAACCAGACCTATTTTCAGACTCACAATGAATCTTCTATGCTTCCACCACCACCACCTGCTGCTGCTGCTGCCCCACACACTGGGGCTTTCTTCTTCCCAGTGCAACATCATGCGCAGGGAGGAGCACCTAGTACGGTGGCATCACAAGGGTTTTGTTTCTCGGAGCTGTCTAATGTTGTTCAACTTCAATCACCTCCTCAACATAACGTTGGTCCTTGCACTAGTCTCTTGCTCAGTGAAATCGTAGGCCATGGTGCTGCTGCATCAAAGAAAGATCTAGAGCAAGACAAGAGTCTGAAAATAATGCACCAGCCCTCACTGTTTAATTTCTGTGTCACTCCCACAACAACAGCTCCTACTTCTGTCTCTGCTGTACCTCCCATCACTACCTCAACCACCACTGTTCTATCCCCCGTCATTGCTCAAGTTCATGGCATGGGAGATCCAGCTGCTGCGGCGAGATCAACGGTGTTCATTAACGATGTGGCATTCGAGGTAGCGGTGGGACCTTTCAATGTGCGTGAAGCTTTTGGAGATGATGCTGTGCTCATCCATGCCACTGGTCAACCTGTGCTAACAAACCAATGGGGTGTCACTCTTCATTCACTCCAGCATGGTGCATGTTATTATTTGGTGCGCACGTTAGACCTGCTTCTGTTGCAATAA 1215 0.4724 MASSNRHWPSMFKSKPCNPHHQWQHDINSSLISTGCHRSPYTSGTGCEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHLQNSKNQNLENQQNPTSLPQITAPSSSSSSSEKSSPKELIPTKVFSIGFSNVTDVVPNSPTTSVNQTYFQTHNESSMLPPPPPAAAAAPHTGAFFFPVQHHAQGGAPSTVASQGFCFSELSNVVQLQSPPQHNVGPCTSLLLSEIVGHGAAASKKDLEQDKSLKIMHQPSLFNFCVTPTTTAPTSVSAVPPITTSTTTVLSPVIAQVHGMGDPAAAARSTVFINDVAFEVAVGPFNVREAFGDDAVLIHATGQPVLTNQWGVTLHSLQHGACYYLVRTLDLLLLQ 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00473 404 FunFam WUSCHEL-related homeobox 11 55 122 - -
Phco11g00473 404 SMART HOX_1 53 120 IPR001356 GO:0003677
Phco11g00473 404 SUPERFAMILY Homeodomain-like 51 119 IPR009057 -
Phco11g00473 404 CDD homeodomain 54 116 IPR001356 GO:0003677
Phco11g00473 404 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 396 IPR044557 GO:0003700|GO:0050793
Phco11g00473 404 MobiDBLite consensus disorder prediction 124 156 - -
Phco11g00473 404 Gene3D - 55 121 - -
Phco11g00473 404 ProSiteProfiles 'Homeobox' domain profile. 51 116 IPR001356 GO:0003677
Phco11g00473 404 MobiDBLite consensus disorder prediction 39 62 - -
Phco11g00473 404 Pfam Homeodomain 55 115 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00473 Phco-Chr11 3212146 3214275 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Phco11g00473 Homeodomain 1.2e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00473 11 3212146 3214275 Phco11g00473 11 3212146 3214275 ECH