Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00470 ATGGACCAACAACATAAAGTGATGATTCTTCTTCAGCTGCTTCTTTTCCAAGTTCTGCTTGTTGCATCCCAGACAGACAGTCGAGATTATTCTGGCCTAAATTCCCTTGCACAATCCTGGACTAGCAAGCCACAGAGTTGGGTGGGTACTGATCCTTGCAGTAGCTGGGATGGAATTCGTTGCAGCAATACAAGAATTACCGAATTGAGACTTCCAAGCTTGAATTTGAGGGGCCAACTGTCTTCAGCAATTGAGTCTTTATCTGAACTAATTACTCTGGATCTTTCTTACAACACGGGTTTGACAGGAACAATTCCAGAAGAAATTGGGAATCTGAAAAGGCTAAAATCCCTATCATTGGTTGGTTGTGGTTTCTCTGGTCCTATTCCGGATTCAATAGGATCTTTAAAGCAGCTGACCTTTCTAGCATTGAACTCTAACAAGTTCACTGGAACTATACCACGCTCTCTTGGCAATCTATCAAATATCAATTGGCTTGATCTTGCTGAAAACGAGCTTGTAGGGACCATTCCTGTCTCTGATAACCAAGGACGACCAGGCCTTGACCTGCTCCTTAAGGCACAACACTTTCATATGGGGAGCAATAATCTCTCTGGTACAATACCAGAAAAACTTTTTAACTCCAGTATGATTCTAGAACACGTGCTTTTTGACCACAATCAACTAGAGGGTAGTGTTCCTATATCCATTAGTTCTGTGGGGACATTGGAAGTTCTGCGCTTAGATAAGAATGGATTAACAGGGGGAGTGCCGGCAAACCTAAGCAAACTCGGAAAACTAAGTGAGATCTATTTATCTCACAATAAGTTCAATGGCACTCTGCCCGATTTTACCGGAATGAATAGTCTCACCTACGTGGACATGAGCGACAATACTTTCAGTGCCACTAATATTCCTTCATGGGTTACAAGTCTGCCGGTACTGACAACAGTGATACTTGGGCAGAACCACCTCGGTGGCGCACTAAATCTTAGTGTCTACAGCAATAGCCTGGAACAAATAAATTTGGAGGATAATGACATAACAGAGATTGACCCGGAAAACAATCTACCAAGTTTCGAAATAAGACTAGCTAACAACCCAATTTGTCGTGAAAGTGGAGCTTCTGAAAAGAGTTACTGCAAACAACCAGTATCAAATCCCTCATTTTACTCAACACCATCAAATAATTGTTCTCCTCCACCTTGCAGTTCCGATCAGATTGCCAGCCCAAATTGTAACTGTGCATTTCCCTATACTGGACTTCTTATATCGAGAGCTCTTAGTTTCTCAAACTTCAGTGACGCAAGGTACTACAGAGAGATTGAGCAGTCTCTGATGGATACTTTCCGAAACAGAAGCATTCCAGTGGATTCAGTTGCTCTTAGTAACCCCGTGAGAAATCCTACTTCTGATAACTTTGAATTGAATCTGCAAGTCTTCCCTTCGCAAAGCGATCGCTTCAATGCAACTGGAATTTTAAATATTGCTTTTCTGCTTAGCAACCAAATTTATAAACCTCCAGAGTTCTTCTCCCCTTACTTCTTCAATGGTGCTAGTTATGAATACACAGGAGGTGAACCAAAAGGATCAAAGTCATCACATACCGGGATTATAGTTGGTGCTGTAGTTGCTGTTGTGGTCTTTCTTGTACTAGCATCCCTTGCAGGGATGTATGCCATTCGCCAGAAAAGAAGAGCAGAAAGATCTGCAGGATTGAACCCTTTTGCCAATTGGGAACTGAATAAGAATAGTGGCACTGCTCCTCAGTTGAAAGGAGGACGATGGTTTGCTTTTGATGAACTAAGGAAATACACCAACAACTTCTCAGAAACCAATACTATTGGATCTGGAGGCTATGGACAGGTTTACCAAGGAACTCTTCCCTCTGGAGAGTTGGTTGCTATCAAACGGGCTGCAAAAGAATCTATGCAGGGTGCTGTTGAGTTTAAAACCGAGATTGAACTTCTATCAAGGGTCCATCATAAGAATCTCGTTAGTCTTCTGGGTTTCTGTTTTGAGAAGGGTGAACAAATGCTGGTGTATGAGTACATTCCAAATGGCACTTTAATGGATAGTCTCTCAGGAAAGTCTGGTATCTGGATGGATTGGATAAGGAGGCTTAAAGTAACATTAGGTGCAGCCAGGGGTCTGGCCTATCTTCATGAACTTGCTAACCCACCAATCATACACAGGGACATCAAATCTAGCAATATCTTACTTGATCATCACCTCAATGCAAAAGTTGCTGATTTTGGTCTCTCCAAACTTCTTGTTGATAGTGAAAGGGGCCATGTCACTACTCAAGTCAAAGGGACAATGGGATACTTGGATCCTGAATATTACATGACCCAGCAGTTAACTGAAAAGAGTGATGTATATAGCTTTGGAGTGCTAATGCTGGAACTAGCAACAGCAAGAAGGCCAATAGAGCAAGGAAAGTATATTGTAAGAGAAGTGATGAGGATAATGGACACATCAAAAGATTTATACAACCTTCATTCCATTATAGATCCAACTATAGTGAAAACAAGACCAAAAGGTTTAGAAAAGTTTGTGATGTTGGGAATGAGATGTGTCAAAGAATATGCAGCTGAGAGGCCTACAATGGCTGAGGTTGTAAAAGAGATTGAGAGCATAATTGAGCTTGTTGGATTGAACCCCAATTCTGAATCAGCTACAACATCAGAAACTTATGAGGAAGCAGGTAGAGAAAATGCCCAACATCCTTACAGGGAAGAAGATTTTAGCTATAGTGGAATGTTTCCATCAACAAGGGTAGAACCCCAATAG 2793 0.4164 MDQQHKVMILLQLLLFQVLLVASQTDSRDYSGLNSLAQSWTSKPQSWVGTDPCSSWDGIRCSNTRITELRLPSLNLRGQLSSAIESLSELITLDLSYNTGLTGTIPEEIGNLKRLKSLSLVGCGFSGPIPDSIGSLKQLTFLALNSNKFTGTIPRSLGNLSNINWLDLAENELVGTIPVSDNQGRPGLDLLLKAQHFHMGSNNLSGTIPEKLFNSSMILEHVLFDHNQLEGSVPISISSVGTLEVLRLDKNGLTGGVPANLSKLGKLSEIYLSHNKFNGTLPDFTGMNSLTYVDMSDNTFSATNIPSWVTSLPVLTTVILGQNHLGGALNLSVYSNSLEQINLEDNDITEIDPENNLPSFEIRLANNPICRESGASEKSYCKQPVSNPSFYSTPSNNCSPPPCSSDQIASPNCNCAFPYTGLLISRALSFSNFSDARYYREIEQSLMDTFRNRSIPVDSVALSNPVRNPTSDNFELNLQVFPSQSDRFNATGILNIAFLLSNQIYKPPEFFSPYFFNGASYEYTGGEPKGSKSSHTGIIVGAVVAVVVFLVLASLAGMYAIRQKRRAERSAGLNPFANWELNKNSGTAPQLKGGRWFAFDELRKYTNNFSETNTIGSGGYGQVYQGTLPSGELVAIKRAAKESMQGAVEFKTEIELLSRVHHKNLVSLLGFCFEKGEQMLVYEYIPNGTLMDSLSGKSGIWMDWIRRLKVTLGAARGLAYLHELANPPIIHRDIKSSNILLDHHLNAKVADFGLSKLLVDSERGHVTTQVKGTMGYLDPEYYMTQQLTEKSDVYSFGVLMLELATARRPIEQGKYIVREVMRIMDTSKDLYNLHSIIDPTIVKTRPKGLEKFVMLGMRCVKEYAAERPTMAEVVKEIESIIELVGLNPNSESATTSETYEEAGRENAQHPYREEDFSYSGMFPSTRVEPQ 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00470 930 ProSiteProfiles Protein kinase domain profile. 609 881 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00470 930 ProSitePatterns Protein kinases ATP-binding region signature. 615 641 IPR017441 GO:0005524
Phco11g00470 930 Gene3D Ribonuclease Inhibitor 283 388 IPR032675 -
Phco11g00470 930 ProSiteProfiles Leucine-rich repeat profile. 337 358 IPR001611 GO:0005515
Phco11g00470 930 FunFam Leucine-rich repeat protein kinase family protein 577 684 - -
Phco11g00470 930 MobiDBLite consensus disorder prediction 889 930 - -
Phco11g00470 930 Gene3D Ribonuclease Inhibitor 187 282 IPR032675 -
Phco11g00470 930 Gene3D Ribonuclease Inhibitor 24 186 IPR032675 -
Phco11g00470 930 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 685 893 - -
Phco11g00470 930 SUPERFAMILY L domain-like 60 371 - -
Phco11g00470 930 FunFam Leucine-rich repeat family protein 28 182 - -
Phco11g00470 930 PANTHER RECEPTOR-LIKE PROTEIN 55 39 880 - -
Phco11g00470 930 SMART serkin_6 609 881 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00470 930 FunFam Leucine-rich repeat protein kinase family protein 184 283 - -
Phco11g00470 930 Pfam Protein kinase domain 610 875 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00470 930 SUPERFAMILY Protein kinase-like (PK-like) 595 892 IPR011009 -
Phco11g00470 930 ProSitePatterns Serine/Threonine protein kinases active-site signature. 729 741 IPR008271 GO:0004672|GO:0006468
Phco11g00470 930 Gene3D Phosphorylase Kinase; domain 1 580 684 - -
Phco11g00470 930 Gene3D Transferase(Phosphotransferase) domain 1 685 898 - -
Phco11g00470 930 CDD STKc_IRAK 615 880 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00470 Phco-Chr11 3189068 3195956 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Phco11g00470 Pkinase 2.9e-47 CL0016