Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00456 ATGGGCTTGATCGATCTGAACACCACCGAGGATGATGAAGCTCCATTATCTGCTTCTTCTTCTTCTGCTGCTTCATCTTCTTCTTCTCACTCGGGGATAAGCACTTCCGCTTCAACCTTGGTTGTTCCTCCTCCTCCTCCTCCTTCCGTGTGCTTGGAACTGTGGCACGCGTGTGCGGGCCCTTTGATCTCTCTGCCGAAGAAAGGAAGTGTTGTTGTGTACTTGCCACAGGGACACTTTGAGCATGTTCAGGATTTTCCGGTCACTGCTTATGATATCCCACCCCATGTGTTCTGTCGTGTTCTTGATGTCAAGCTCCATGCAGAGGAAGGGAGCGATGAAGTATATTGCCAAGTGTTGTTGGTTCCTGAAAGCGAGCAACTGGAGCAAAGTTTGCCTGAAGGCGAAATTGAAGCTGATGGGGAAGAGGGGGACACTGAAGCTATGGTGAAGTCAACAACTCCCCATATGTTCTGCAAGACTCTCACAGCTTCAGACACCAGCACTCATGGTGGATTTTCAGTGCCTCGCCGAGCAGCTGAAGATTGCTTTCCTCCCCTGGATTACAGTCAACAGAGACCTTCACAGGAGCTCGTGGCAAAGGATCTTCATGGACTGGAATGGAGGTTTCGTCATATATACAGGGGTCAACCACGGAGACATTTGCTAACTACTGGGTGGAGTGCATTTGTGAACAAAAAGAAGCTTGTTTCTGGAGATGCTGTGTTGTTTCTTAGGGGCGACGATGGAGAACTGAGATTAGGGATTCGTAGGGCAGCCCAATTGAAAGGTTCTGGTTCCTTTGCAGTTCCCTCTGGTCAGCAATTGAATCCTGGAACTTTCATGGATGTTGTTAATGCATTATCTACAAGATGTGCTTTTAGTGTTTGCTACAATCCAAGGTTTAGCTCTTCGGAATTCATCATACCAGCTCACAAATTCTTAAAGAGTCTTGACAATTCTTATTTAGTTGGGATGAGGTTCCGGATGCGTTTCGAAACCGAAGATGCTGCAGAGCGGAGATTTACTGGATTAATTGCTGGAATCAGTGATGTCGATCCTGTTAGGTGGCCTGGATCAAAATGGAGATGCCTACTGGTAAGGTGGGATGACATGGAAGCTGCTAGGCACAATAGGGTTTCCCCATGGGAAATTGAGCCATCTGGTTCTGCTTCAAGTTCCAGCAACATGATGGCAGCTGGTTTGAAGAGGACCAGGATTGGAATGACTTCAACGAAGATGGAATTTCCTTCTCCCAATGGGATTGGAACATCAGACTTTGGGGAATCATTAAGGTTCCGGAAGGTCTTGCAAGGTCAAGAAATTTTGGGTGTTAATCCTCCGTTTGATGGTATTAATGCTCCGAGTCCTCGGTTATATGACTTAGGGAGGTACTATCTCGGTCCAAACTGTTCTGGGATTCCTCCTACAGGAAATAGCATCAGAATGCCACATGCAGCATCTGATTTTTCCTGCAATGGCACAGGCTTTAGTGAATCTTTCGGGTTCCAAAAGGTCTTGCAAGGTCAAGAAATTCTTCCAAGCCAACCATATGGAAGATCATTGTCAATCGAGGAGGCTCGAGCTAATGGTCGCTTTGGACATTTTGATGGTTATCAGTTGCTTAACTCCAGAAATGCGTGGTCTGTACAGATGCATGACAATGCTCCACATTTGCATGCATCCGTTACACCTTCACAAGTGTCATCTCCATCATCTGTGTTAATGTTCCAGCAAGCAGTTAGTCCAGTTTCCAACTGTGATTATAATAATAAGAAACATAGTAAGATGTACCAAGGTTTATGCGCATCTGAAGTGAAAGCTAGAACATTTGCATCTTCCCCATCTAATGATCTTACTTTCTCTAGGCGAGCTCCGGAAAGGGCTAGTTCTTTAGGTATGTTTGATGTTCATAATCAGTTGGGTAGTTCACAGTCACACAATTCTGTGTCAGCATTGAGAAACAATCAAGAGTTGGTTTCGTCATGTAAAAGCAGTTGTAGACTTTTTGGTTTTTCATTGACTGAGGACGCACATGTTGCAAATAAAGAGGTTGATGCCTCTACCATCACTTTACCATTGAATGCTGGACCTTCCTTTACTAGACTTGTTGAAGATGAGTTCCATCCCAGCCGGGCACTTCAGAGCAAGGCGGTTGGAAGTAACTGCACAAAGGGCGTGTTGCAGTATTGA 2193 0.4546 MGLIDLNTTEDDEAPLSASSSSAASSSSSHSGISTSASTLVVPPPPPPSVCLELWHACAGPLISLPKKGSVVVYLPQGHFEHVQDFPVTAYDIPPHVFCRVLDVKLHAEEGSDEVYCQVLLVPESEQLEQSLPEGEIEADGEEGDTEAMVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGDDGELRLGIRRAAQLKGSGSFAVPSGQQLNPGTFMDVVNALSTRCAFSVCYNPRFSSSEFIIPAHKFLKSLDNSYLVGMRFRMRFETEDAAERRFTGLIAGISDVDPVRWPGSKWRCLLVRWDDMEAARHNRVSPWEIEPSGSASSSSNMMAAGLKRTRIGMTSTKMEFPSPNGIGTSDFGESLRFRKVLQGQEILGVNPPFDGINAPSPRLYDLGRYYLGPNCSGIPPTGNSIRMPHAASDFSCNGTGFSESFGFQKVLQGQEILPSQPYGRSLSIEEARANGRFGHFDGYQLLNSRNAWSVQMHDNAPHLHASVTPSQVSSPSSVLMFQQAVSPVSNCDYNNKKHSKMYQGLCASEVKARTFASSPSNDLTFSRRAPERASSLGMFDVHNQLGSSQSHNSVSALRNNQELVSSCKSSCRLFGFSLTEDAHVANKEVDASTITLPLNAGPSFTRLVEDEFHPSRALQSKAVGSNCTKGVLQY 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00456 730 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 49 682 IPR044835 GO:0003677|GO:0006355|GO:0009725
Phco11g00456 730 Pfam Auxin response factor 285 365 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Phco11g00456 730 SMART B3_2 158 260 IPR003340 GO:0003677
Phco11g00456 730 SUPERFAMILY DNA-binding pseudobarrel domain 151 265 IPR015300 -
Phco11g00456 730 Gene3D - 156 260 IPR015300 -
Phco11g00456 730 ProSiteProfiles B3 DNA-binding domain profile. 158 260 IPR003340 GO:0003677
Phco11g00456 730 MobiDBLite consensus disorder prediction 12 39 - -
Phco11g00456 730 Gene3D - 322 395 - -
Phco11g00456 730 Pfam B3 DNA binding domain 158 259 IPR003340 GO:0003677
Phco11g00456 730 CDD B3_DNA 156 258 IPR003340 GO:0003677
Phco11g00456 730 MobiDBLite consensus disorder prediction 1 40 - -
Phco11g00456 730 FunFam Auxin response factor 321 392 - -
Phco11g00456 730 FunFam Auxin response factor 156 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00456 Phco-Chr11 3123355 3127915 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Phco11g00456 B3 3.5e-22 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00456 11 3123355 3127915 Phco11g00456 11 3123355 3127915 ECH