Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00452 ATGACAAAAACATCCCTCCGACATGACCTGTCACCTCTTCATCCCAAACATCCAGATGACAGCAACTGTCCTGTACCACAGCATAGAGGGTTTGGAAGAAAATTGAAAGGGTTTCGCTTTGAGAAATATCTGCATGTGCAAAAGGAAATTAACACAAAGATGACATGGTGCAATGACCCTGATGAAGAGAGAAGGATTGAATCAATCACGCCAACTATGATTATTACTCAAAAGACTGATGTCAGTGACATAAAACTCACCGAAGAAATTCGAACTATAACATGCCCCTCGTGCGGCCATACCATAGAATTCAAAGATCAGGGCGGAATTCATGAGTTGCCGGGGTTACCAGCTGGAGTGAAATTTGACCCAAATGACCAAGAAATACTAGAGCATTTAGAGGCAAAAGTGGCGTCTGATGCATGCAAGCTTCATCCCCTTATTGATGAGTTCATACCAACTCTTGAAGGCGAGAATGGGATTTGCTCTACGCACCCAGAAAAACTACCAGGAGTTAGCAAAGATGGACAGATCCGGCACTTCTTTCACAGGCCATCAAAAGCATACACAACTGGAACAAGGAAAAGAAGAAAGGTCCACACGGATGAAGAAGGAAGTGAAACAAGATGGCACAAAACGGGAAAAACTAGAGCCGTTTTTGCAGCTGGTGGTGCCGTGAAAGGTTTTAAAAAAATACTAGTACTCTACACCAACTATGGCAGGAAAAAGAAGCCCGAGAAGACTAATTGGGTGATGCATCAGTATCACCTTGGCAGCACTGAAGAAGAGAAAGATGGAGAATTAGTTGTTTCAAAGATATTCTATCAGACACAACCTAGACAATGTGGCAATAATCCCATTATGATTGAGGAGCCGTACCAAAAAATGTTGAATATCGATGGAAGTGGCCACAACAACAATACATCAACACCTAAAACTGCAACTCTTGTGGATGGCTACATAAATTATGGTAATGAGCATTTTAGTTATAATAGGGAAAGCTCCCCACAACTAATTCTTCCCAACTTGGTGGTTCAAGCTGATGGCTCTTATATTCGCTATGCAATGGATGCAAAGAAAGCAAGAGTTGAAAGTAACACTGGGAAGAGCTTCTAG 1116 0.4203 MTKTSLRHDLSPLHPKHPDDSNCPVPQHRGFGRKLKGFRFEKYLHVQKEINTKMTWCNDPDEERRIESITPTMIITQKTDVSDIKLTEEIRTITCPSCGHTIEFKDQGGIHELPGLPAGVKFDPNDQEILEHLEAKVASDACKLHPLIDEFIPTLEGENGICSTHPEKLPGVSKDGQIRHFFHRPSKAYTTGTRKRRKVHTDEEGSETRWHKTGKTRAVFAAGGAVKGFKKILVLYTNYGRKKKPEKTNWVMHQYHLGSTEEEKDGELVVSKIFYQTQPRQCGNNPIMIEEPYQKMLNIDGSGHNNNTSTPKTATLVDGYINYGNEHFSYNRESSPQLILPNLVVQADGSYIRYAMDAKKARVESNTGKSF 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00452 371 FunFam NAC domain-containing protein 73 125 280 - -
Phco11g00452 371 Pfam No apical meristem (NAM) protein 117 257 IPR003441 GO:0003677|GO:0006355
Phco11g00452 371 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 78 306 IPR044799 GO:0003700
Phco11g00452 371 ProSiteProfiles NAC domain profile. 116 276 IPR003441 GO:0003677|GO:0006355
Phco11g00452 371 Gene3D NAC domain 125 280 IPR036093 GO:0003677|GO:0006355
Phco11g00452 371 MobiDBLite consensus disorder prediction 1 28 - -
Phco11g00452 371 MobiDBLite consensus disorder prediction 189 208 - -
Phco11g00452 371 SUPERFAMILY NAC domain 111 276 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00452 Phco-Chr11 3083073 3086947 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phco11g00452 NAM 1.4e-22 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00452 11 3083073 3086947 Phco11g00452 11 3083073 3086947 ECH