Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00449 ATGTCACTGCTTCCTCTCTTCCTCTTGAGCGTGCTTCTCCTCCAGCAACCCTTCTTCATCTCTGCTCTGAACCAGGATGGTTTATATCTGTACCAGTGGAAGCAATCCCTGGATGACCCTGACTCGTCACTGGCGTCCTGGAACAACCGCGACACCACCCCATGCAATTGGGCCGGCGTCACCTGTGGCCCAAATACCAGCGCCGTCACTTCACTCGACCTCTCCAACTTCAACGTCGCAGGCCCATTCTCCGCTACCTTCCTCTGCCGCCTCCCCAACCTCACCTCCATCATCCTCTTCAACAACTCCATCAACCATACCCTCCCTCTCCAAATATCCCTCTGCACCCCTCTCCTCCACCTCGACCTCTCCCAGAACCTCCTCACCGGCACCCTCCCCCACACCCTCCCCCTCCTCCCCAGCCTCCGCTACCTCGACCTCACCGGCAACAACTTCTCCGGCCCCATTCCCCCCTCCTTCGGAACCTTCCAGAACCTTCAAACTCTCTCCCTCGTATTCAACCTCCTCGACGACGTCCTTCCGCCTTCTCTCTTCAACATCACCTCCCTCAAAACGCTCAACCTCTCCTACAACCCCTTCCATCCTTCCCCCATTCCTTCCTCCCTCGGCAACCTCACCAACCTGGAAACGCTCTGGCTCAGCGCCTGCAATCTCGTCGGCCCCATACCCGACTCCCTCGGCAACCTCAAAAGCCTTCGCGTCTTGGATTTGACCTCCAACAACCTCTATGGACCCATCCCTAGTTCGCTCACTCGCATCACCACTGTCAAGCAGATTGAGTTGTACAACAACTCGCTCTCCGGTGAATTGCCTAAAGGAATCTCCAACCTCACTTCGTTGAGGCTCTTTGATGTTTCCATGAACCATTTGAGTGGGAGCATTCCCGATGAGTTGTGTCGTCTGCCTCTCGAGAGTCTCAACCTCTATGAGAACGGTTTCACCGGGGAGTTGCCACCGAGCATTGCTGACTCGCCCAACCTCTATGAGCTTAAGTTGTTCGGGAACAAACTCACCGGGAAATTGCCGGACAGTTTAGGGAAGTCTGCTCCTTTGAGGTGGCTTGACGTTTCCACCAACCGTTTCTCCGGTGGGATTCCGCCGAGTCTCTGCGCGCGCGGCGAGCTGGAGGAGTTGTTGATGCTCGGGAACGAGTTCTCCGGGGAGATACCGACCAGTTTGGGCTCGTGTCAGAGCTTGACGCGTGTGAGGTTGGCTACGAACCGGTTGTCCGGCGAGGTTCCGGCGGGTATGTGGGGTCTTCCACATGTGTATTTGCTTGAACTGATGGATAACTTGTTTAGTGGCTCGATTGCGAGGACCATTGGTGGGGCGGGGAATTTGTCGTCGTTGATTCTGACGAAGAACAATTTCTCCGGTGTGATCCCCGACGAGATTGGGTGGTTGGAGAATCTTCAAGAGTTTTCTGGTGGTGATAACAGGCTCAGTGGGTCGTTGCCTGGGAATGTTGTGAATCTTGGGCAGCTTGGGACTCTTGATCTTCACAATAATATGTTATCCGGGGAGCTCCCCGAGGGGATTCAATCGTGGAAGAAACTCAATGACTTGAATTTGGCTAATAATAAGATTGGTGGGAAGATTCCTGATGGAATTGGCAGTTTGGCTGTGTTGAATTTTCTTGATCTTTCCAACAATCAATTTTCTGGGAATGTTCCTATGGGGTTGCAGAATTTGAAGCTCAATCAGCTCAATTTGTCTTATAATAGGCTTTCTGGAAAGCTTCCCCCACTGTTGTCCAAGGATATGTACAGGGCTAGTTTTATTGGTAATCCTGGCTTGTGCGGGGATTTCAAAGGTTTGTGTGATGGCAAAGATGGGGATAAGGGTAAGGGTTTTGTGTGGATTCTGCGAGCTATTTTTATAGCTGCCACTTTGGTGTTTGTCATCGGTGTGGTCTGGTTTTTCTTAAGGTATAGGAATTTCAAGAATGCTGAGAGATCTGTTGATAAATCAAAGTGGACTTTGATGTCGTTTCATAAACTGGGTTTCAGCGAAGATGAGATCTTGAATTGCCTTGATGAAGATAATGTGATAGGAAGTGGGTCTTCCGGGAAGGTTTACAAGGTTGTGTTGACCAGCGGCGAAGTGGTTGCTGTGAAGAAGATATGGGGTGGGGTCAAGAAGGAAATAGACAGTGGAGATGTGGAGAGGGGTCAGTTTTATCAAGACAGTGCTTTTGACGCAGAGGTTGAAACTTTGGGAAAAATTAGGCACAAGAACATTGTCAAACTGTGGTGTTGCTGCACTACTAGGGACAGCAAGCTATTGGTTTATGAGTATATGCCGAACGGTAGTCTGGGTGATTTGCTGCATAGCAATAAAGGAGGGTTGTTGGATTGGCCAACTAGGTATAAGATAGCTGTTGATGCTGCAGAAGGGCTCTCTTATTTGCATCACGACTGTGTTCCTTCAATTGTTCATAGAGATGTGAAATCTAATAACATCTTGTTGGATGGGGAATTCGGTGCAAGGGTGGCGGATTTTGGAGTGGCTAAGGTAGTTGATGCCACCGGGAAAGGAACGAAATCCATGTCTGTCATAGCTGGGTCTTGTGGGTACATTGCACCAGAATATGCATATACACTTAGAGTGAACGAGAAGAGTGACATATATAGTTTTGGTGTTGTCATACTTGAGTTGGTTACTGGAAAGAGGCCCATTGACCCTGAATTTGGGGAAAAAGACTTGGTTATGTGGGCTTGCACCACCTTGGATCAGAAAGGTGTGGACCATGTGATTGACGCGAGGCTTGATTCTTGTTTCAAAGAAGAAATTTGCAAGGTCCTCAACATTGGCCTCATGTGCACCAGTCCTCTTCCAATCAACCGGCCTGCAATGAGAAGGGTGGTGAAGATGTTACAAGAGGTGGGCACAGAGAACCAAACAAAACCAGCCAAGAAAGATGGAAAGTTGTCCCCATATTACTATGACGATGGCTCTGATCATGGAAGTGTTGCTTAG 3000 0.4967 MSLLPLFLLSVLLLQQPFFISALNQDGLYLYQWKQSLDDPDSSLASWNNRDTTPCNWAGVTCGPNTSAVTSLDLSNFNVAGPFSATFLCRLPNLTSIILFNNSINHTLPLQISLCTPLLHLDLSQNLLTGTLPHTLPLLPSLRYLDLTGNNFSGPIPPSFGTFQNLQTLSLVFNLLDDVLPPSLFNITSLKTLNLSYNPFHPSPIPSSLGNLTNLETLWLSACNLVGPIPDSLGNLKSLRVLDLTSNNLYGPIPSSLTRITTVKQIELYNNSLSGELPKGISNLTSLRLFDVSMNHLSGSIPDELCRLPLESLNLYENGFTGELPPSIADSPNLYELKLFGNKLTGKLPDSLGKSAPLRWLDVSTNRFSGGIPPSLCARGELEELLMLGNEFSGEIPTSLGSCQSLTRVRLATNRLSGEVPAGMWGLPHVYLLELMDNLFSGSIARTIGGAGNLSSLILTKNNFSGVIPDEIGWLENLQEFSGGDNRLSGSLPGNVVNLGQLGTLDLHNNMLSGELPEGIQSWKKLNDLNLANNKIGGKIPDGIGSLAVLNFLDLSNNQFSGNVPMGLQNLKLNQLNLSYNRLSGKLPPLLSKDMYRASFIGNPGLCGDFKGLCDGKDGDKGKGFVWILRAIFIAATLVFVIGVVWFFLRYRNFKNAERSVDKSKWTLMSFHKLGFSEDEILNCLDEDNVIGSGSSGKVYKVVLTSGEVVAVKKIWGGVKKEIDSGDVERGQFYQDSAFDAEVETLGKIRHKNIVKLWCCCTTRDSKLLVYEYMPNGSLGDLLHSNKGGLLDWPTRYKIAVDAAEGLSYLHHDCVPSIVHRDVKSNNILLDGEFGARVADFGVAKVVDATGKGTKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGKRPIDPEFGEKDLVMWACTTLDQKGVDHVIDARLDSCFKEEICKVLNIGLMCTSPLPINRPAMRRVVKMLQEVGTENQTKPAKKDGKLSPYYYDDGSDHGSVA 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00449 999 SMART serkin_6 685 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00449 999 Pfam Protein kinase domain 687 903 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00449 999 Pfam Leucine rich repeat 92 152 IPR001611 GO:0005515
Phco11g00449 999 ProSiteProfiles Protein kinase domain profile. 685 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00449 999 Gene3D Phosphorylase Kinase; domain 1 669 773 - -
Phco11g00449 999 Coils Coil 999 999 - -
Phco11g00449 999 Gene3D Transferase(Phosphotransferase) domain 1 774 991 - -
Phco11g00449 999 FunFam Receptor-like protein kinase HSL1 308 616 - -
Phco11g00449 999 SUPERFAMILY Protein kinase-like (PK-like) 680 966 IPR011009 -
Phco11g00449 999 Gene3D Ribonuclease Inhibitor 204 309 IPR032675 -
Phco11g00449 999 MobiDBLite consensus disorder prediction 974 988 - -
Phco11g00449 999 FunFam Leucine-rich receptor-like protein kinase family protein 205 303 - -
Phco11g00449 999 SUPERFAMILY L domain-like 40 373 - -
Phco11g00449 999 Pfam Leucine Rich Repeat 189 212 IPR001611 GO:0005515
Phco11g00449 999 ProSitePatterns Serine/Threonine protein kinases active-site signature. 818 830 IPR008271 GO:0004672|GO:0006468
Phco11g00449 999 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 23 187 - -
Phco11g00449 999 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 774 983 - -
Phco11g00449 999 Pfam Leucine rich repeat N-terminal domain 24 62 IPR013210 -
Phco11g00449 999 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 262 967 - -
Phco11g00449 999 MobiDBLite consensus disorder prediction 970 999 - -
Phco11g00449 999 Gene3D Ribonuclease Inhibitor 310 616 IPR032675 -
Phco11g00449 999 SUPERFAMILY L domain-like 310 607 - -
Phco11g00449 999 PRINTS Leucine-rich repeat signature 236 249 - -
Phco11g00449 999 PRINTS Leucine-rich repeat signature 118 131 - -
Phco11g00449 999 Gene3D Ribonuclease Inhibitor 23 203 IPR032675 -
Phco11g00449 999 ProSitePatterns Protein kinases ATP-binding region signature. 691 714 IPR017441 GO:0005524
Phco11g00449 999 FunFam Receptor-like protein kinase HSL1 669 773 - -
Phco11g00449 999 ProSiteProfiles Leucine-rich repeat profile. 572 594 IPR001611 GO:0005515
Phco11g00449 999 SMART LRR_typ_2 139 165 IPR003591 -
Phco11g00449 999 SMART LRR_typ_2 91 115 IPR003591 -
Phco11g00449 999 SMART LRR_typ_2 284 308 IPR003591 -
Phco11g00449 999 SMART LRR_typ_2 187 212 IPR003591 -
Phco11g00449 999 SMART LRR_typ_2 547 570 IPR003591 -
Phco11g00449 999 SMART LRR_typ_2 236 260 IPR003591 -
Phco11g00449 999 SMART LRR_typ_2 499 522 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00449 Phco-Chr11 3059560 3062925 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Phco11g00449 Pkinase 3.7e-42 CL0016