Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00447 ATGGAGGCTGAGGCAGAGAACAACGAGGTGAAGAGGGAAGAAAACAGCAATGACAACAACAATAACAATGAAAGTAACAGCAAATTTGGAAATTCGAGTGAGGGTCAGAGCAAGCCAAAGCGCCAGATGAAGACGCCGTTTCAGCTTGAAACTCTCGAGAAAGCTTATGCTGTGGAGAATTACCCGTCCGAGATGATGAGGGCAGAGTTGTCTGAGAAGTTGGGGTTGTCCGATCGGCAGTTGCAGATGTGGTTCTGTCACCGGCGGTTGAAGGACAAGAAGGAGTTGCCGTCGAAAAAGCCGCGTAAGGCGGCGGCTTTACCTGATTCTCCGGTTGAGGAGCCCAAGCTGGCTTCTGAAGTGGGTCCTGAATACGGATCCGGGTCGGGTTCAGGCTCCAGTCCGTTTACCCGTTCGGAGTTGAGGAATGTGGTGCCTCGGGGGTACTATGAGTCGCCACAGACTATAATGGAGCTTAGAGCAATTGCTTGTGTGGAGGCTCAGTTGGGGGAGCCTTTGAGGGAAGAAGGACCTATTCTTGGAGTGGAGTTTGATCCGTTGCCACCAGATGCATTTGGGGCACCCTTAGCTGTTACAGATCCTCAAAAGCGGCCTAGTCTTGCCTATGAAAATAAAATGTACGAAAGACATGATGTTAGGACAAATAAGGCAATAACAAGGACATTCCATGAATATCCCTTTCTTCCAAGCCAGTCTGGCATTAGATCTGATGTTTTTGGACAAATAAACCTCCCCCATTTACATGAACCAATGGAGGGTCCAGCAAGAACTCCTTTTCCCCTTGGAAATGAACAACAACCTAGAATTCATGCTCCCCAAAGTCATTCTTCTCGTGTTCGTGTTTTGTCTCAACCACTGGACAAGCAAGTAATTCCCTATCCATCTCCCCCTCGAGAAAATGATATTGTACCCAAAAGGGAACCTCACATAAACATAACTAATACTGGAATGAACTCCCACTATACTACTGATCACCCAATTGTTGGACAAGAAATTCCATATGCTTTACCTGGTGGGCAAGTATCTCATAATGATGCAGTATTGAGGATGGAGAGGAAACGGAAGATTGATGAAGCCAGAGTTGCGAAGGAAGTTGAAGCCTACGAAATGAGGATGCGGAAAGAACTTGAGAAACAAGATAACCTCAAACGAAAGAGTGAAGAGAGAATGAAGAAGGAAATGGAAAGGCAAGATCGTGAGAGAAGGAAGGAAGAAGAGAGGTTGTTGCGTGAGAAACAGCGAGAAGAGGAAAGATCAAAACGTGAGCAAAGGCGGGAACTGGAGCGAAGGGAGAAATTTTTGTTGAGAGAACATTTGAGAGCTGAGAAAAGGAGGCAAAAAGAAGAGATCCGCAAAGAGAAAGAGGAAGAGAGGAGGAAGGCTGCACTTGAGAAGGCAAATGCTCGGAGAATAGCCAAAGAATCTATGGAGCTTATTGAGGATGAACAACTGGAATTGATGGAGTTGGCTGCTGCAAGCAAGGGGCTTTCCTCTATTATTCATATTGATCTTGATACTTTGCAAAACCTTGAATCATTTAGGGATTCATTGTGTGTATTTCCACCCAAGAGTGTAAAGCTGAGAAAACCATTTGCTATCCAACCTTGGAGCAACTCAGAGCAGAATGTTGGCAACCTTCTCATGGTTTGGAGATTCTTGATTACTTTTGCAGATGTTCTTGATTTATGGCCTTTTACTCTTGATGAGTTTGTACAGGCATTTCATGACTATGATTCTAGATTGTTGGGGGAGATACATGTTGCTCTTCTCAAGGTGATAATAAAGGACATTGAAGATGTTGCAAGAACACCTTCTACCGGATTGGGGATGAATCAGAACGGAGCTGCTAATCCTGGAGGGGGCCATCCAGAGATTGTGGAAGGAGCATATGCATGGGGCTTTGACATACGAAATTGGCAGAAGAACTTGAATCAGTTGACATGGCCAGAAATTTTCCGACAGTTAGCACTGTCTGCAGGATTAGGACCGCATCTGAAGAAAAGAAGTATTGCATGGTCATACACAATTGATAAAGACGAGGGGAAAAGCGGTGTAGATATCATTTCTACACTTCGTAATGGTTCAGCAGCTGAAAGTGCTGTGGCCAAAATGCAAGAGAGAGGTCTGTTGGCTCCCCGAAGATCAAGGCACCGGTTAACTCCTGGAACAGTTAAATTTGCAGCATTTCATGTTCTCTCACTGGAGGGTAGTAAGGGTTTGACAGTACTAGAGCTTGCAGAAAAAATTCAGAAATCTGGTCTTCGGGACCTAACAACCAGCAAGACACCTGAAGCATCAATTTCTGTTGCTTTGACAAGAGACACTAAATTGTTTGAAAGAATAGCTCCATCAACATATTGTGTACGAGATGCATTCAGAAAGGATCCTGCTGATGCTGACTCCATTCTTACAGAAGCAAGAAAGAAAATTCAGATATTTGAAAATGGGTTTCTAGCTGGTGAAGATGCTGATGATGTTGAAAGAGAAGAGGAGTCGGAAAGTGATGAAGTTGATGAGGATCCTGAAGATGAGGATTTAGTAAATCCTTCTAGTGCAAACCAAAATTCTGAACAGTATGAGGACACAAACATTTGCTCATCAAATGGAAAAGAAAATTTGGATCACAACATAGATCTTGTTCAAAATGAGTTTGATACAGATCTACCCTGTTTTCCTAAGAATGCTTCCACAGATGCTGATTGTCCCAGTTCTGTCACCGGACCGGTTACTTGTGGAGATTTAAATGCTGGCAATATTGATCAAGATAATATGGAAATTGATGAAAGCATATCTGGAGAATCCTGGATTCTAGGGCTTGCAGAAGGAGAATATTCTGTTCTCAGCGTAGAGGAGCGTCTAAAAGCTCTTGTTGCTTTGGTTGGTGTGGCAAATGAAGGAAATTCAATCCGTGTCGTCCTTGAGGATCGACTGGAATCAGCAAATGCTCTGAAGAAACAAATGTGGGCAGATGCACAAATAGATAAAGTTCGTCTGAAAGATGATAATATTGGTAAATTAGATTTCCCATCTCTTGCTGGGAATAAAGTTGAAACACAATATACATATCCAGCTGTGGAGGGAAACCAAAGCCCAATAATGCTTGACATTAATATTAACAATAATGAAGCATCACCCAGCACTGCAGAAAACCAAAAAGGAGATCCTGTTGCACTGAGCATGCCTATCGAGAAGTCCTCATCAGTTCAAGATTTTGGCACTGGTACTGGTGCAGACATCCCTCAGACTCAAGTACCTGCACAATATTCGAAAAGGTCACGTTCACAGTTGAAATCTTATTTTGCCCACCTAGCAGAGGAGATGTATGTCTACAGGTCTTTACCCCTTGGCCAAGATCGCAGACGTAATCGATATTGGCAGTTTGTTGCATCTGCTTCTAGCAATGATCCTGGTTCTGGCAGGATCTTTGTTGAATGTCATGATGGCAAGTGGTGGCTTATTGATTCTGAAGAGGCCTTTGATTCTCTTTTGACATCATTGGATTCACGTGGGCTCAGGGAATCTCATTTGCGCTTAATGTTGCAAAAGATTGAGAATTCCTTTAAAGAAAATGTTCGAAAGAGGAATGCGCATTGTGCCAAAAACGGAAGCAGAGGCGAAGTTTCTATTAAAATTGAAGCTAATGAACCATATTCTATCCCTGACCACAATGCTGGATCTGACAGTCCTAGCAGTACCCTTCATGACTTGAACACGGATACATCTGAAACCTCATCATCCTTCAAAATTGAGCTTGGGAAAAGTGAGAGTGAGAAGAAAGCTGCCTTGAGAAGGTATCAAGATTTTCAGAAGTGGTTGTGGAAAGAATGCTATAATTCATCGGTTTTATGTGCAATGAAATATGGGGTAAAGAGATGCAAACCTCAGATGGACATTTGTGATATCTGTCTCGATCTTTGTTTTGTTGAAGACTCTCATTGCAGTTCCTGCCACCGGACTTTTCCCTCAAATAATGGCTTTAATTTTTCTAAGCATGTATTTCAATGTCGGGACAAGTTATGCAAAGATAATTATACTTTGGAATACTCTCTTCCCTTGCGGACAAGATTGCTTAAGGTCCTGTTGGCTTGTATGGAGGTATCTGTTCTATCTGAAGCATTTGGAACAAATTGGACCGATGATATTAGGTTGCACTGGGGTGTAAAGTTGAGCAAATCATCTTCTGTTGAGGAACTTATACAGATATTGACCCTATTTGAGAAAGCACTACGGCAAGATTTTCTGTCATCTAACTTCTCTACAACAGATGAATTGTTGGGATCAAGCAGTATGTCAGAATGTTCTGGGCAGCCTTCAACTGATCCTGAATCTGTTGCTGTGCTTCCATGGGTTCCACTAACGACTGCAGCTTTGTCTCTCAGACTTTTTGAGATTGATTCATCCATCAGCTATGTAAAGCCTGAAAGACTTGAGCCTTCTGAGGAAAAAGAAGCAAGAGAATACATAAGGTTTCCTTCAAGATACACTCACTTGAAATCTAATAGGGAGGTTGAACCAGCAGAATTTGACCATGATGAATTCACTAAAGATAAATCTGTTTCTAAGAAAATTGTACGAAATGGAAATAAACGTAGTCGAGGGACTAATGAACCAGGACGGGGCAAAAAACTGGCCAAAAGAGTGTACAATTCCAAACGAGATGGTGGTCGGAAGAATGCTAAGGTCACCGTCAATTTGAGTCACAAATTAAAACAGCAGGCGCGAGGAACACAGGGACAAGGTGCTGGACGAGGTCGCCGAACACTTAGAAAGCGGAGAGTGGGAAAGCGAGCTGTTGAAGATTTGTTGCTGGGCCATACGACAGCCAGTCATAGCTCCAAGATTGATAGAGAACCATTGAAAAATTTAGATGAGGAATGGGATGGAGAAAAGGCAAGTCCAATGACTCCGGTGCACATTGGGGTTGCTGCTGACGTTAGTAATAGTGCTGAAGAGGTAGAATCTGATTATGACCATACTCAGGCTGTGGAATATGATCAAGGAAACTGGGAGGTAGGTTTTAACGGTGTTCCCCCCAACAGATGGAGTACGGATTTGGTTGGAATGAGTGACGAAGATGTGGATGCTTCTGAAGATGACAATGACAATGGAATTGAAGAGAATGAAGATGAGGATTCGGAAGCAGATGTTATGAGTGAGGGTTCAGATGGCATGGGAAATAGGGTAGTAAATGTTGGAGGCTCATACTCAGCTTTGTCTGAAGATTCTTCCGATTAG 5256 0.4296 MEAEAENNEVKREENSNDNNNNNESNSKFGNSSEGQSKPKRQMKTPFQLETLEKAYAVENYPSEMMRAELSEKLGLSDRQLQMWFCHRRLKDKKELPSKKPRKAAALPDSPVEEPKLASEVGPEYGSGSGSGSSPFTRSELRNVVPRGYYESPQTIMELRAIACVEAQLGEPLREEGPILGVEFDPLPPDAFGAPLAVTDPQKRPSLAYENKMYERHDVRTNKAITRTFHEYPFLPSQSGIRSDVFGQINLPHLHEPMEGPARTPFPLGNEQQPRIHAPQSHSSRVRVLSQPLDKQVIPYPSPPRENDIVPKREPHINITNTGMNSHYTTDHPIVGQEIPYALPGGQVSHNDAVLRMERKRKIDEARVAKEVEAYEMRMRKELEKQDNLKRKSEERMKKEMERQDRERRKEEERLLREKQREEERSKREQRRELERREKFLLREHLRAEKRRQKEEIRKEKEEERRKAALEKANARRIAKESMELIEDEQLELMELAAASKGLSSIIHIDLDTLQNLESFRDSLCVFPPKSVKLRKPFAIQPWSNSEQNVGNLLMVWRFLITFADVLDLWPFTLDEFVQAFHDYDSRLLGEIHVALLKVIIKDIEDVARTPSTGLGMNQNGAANPGGGHPEIVEGAYAWGFDIRNWQKNLNQLTWPEIFRQLALSAGLGPHLKKRSIAWSYTIDKDEGKSGVDIISTLRNGSAAESAVAKMQERGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSKGLTVLELAEKIQKSGLRDLTTSKTPEASISVALTRDTKLFERIAPSTYCVRDAFRKDPADADSILTEARKKIQIFENGFLAGEDADDVEREEESESDEVDEDPEDEDLVNPSSANQNSEQYEDTNICSSNGKENLDHNIDLVQNEFDTDLPCFPKNASTDADCPSSVTGPVTCGDLNAGNIDQDNMEIDESISGESWILGLAEGEYSVLSVEERLKALVALVGVANEGNSIRVVLEDRLESANALKKQMWADAQIDKVRLKDDNIGKLDFPSLAGNKVETQYTYPAVEGNQSPIMLDININNNEASPSTAENQKGDPVALSMPIEKSSSVQDFGTGTGADIPQTQVPAQYSKRSRSQLKSYFAHLAEEMYVYRSLPLGQDRRRNRYWQFVASASSNDPGSGRIFVECHDGKWWLIDSEEAFDSLLTSLDSRGLRESHLRLMLQKIENSFKENVRKRNAHCAKNGSRGEVSIKIEANEPYSIPDHNAGSDSPSSTLHDLNTDTSETSSSFKIELGKSESEKKAALRRYQDFQKWLWKECYNSSVLCAMKYGVKRCKPQMDICDICLDLCFVEDSHCSSCHRTFPSNNGFNFSKHVFQCRDKLCKDNYTLEYSLPLRTRLLKVLLACMEVSVLSEAFGTNWTDDIRLHWGVKLSKSSSVEELIQILTLFEKALRQDFLSSNFSTTDELLGSSSMSECSGQPSTDPESVAVLPWVPLTTAALSLRLFEIDSSISYVKPERLEPSEEKEAREYIRFPSRYTHLKSNREVEPAEFDHDEFTKDKSVSKKIVRNGNKRSRGTNEPGRGKKLAKRVYNSKRDGGRKNAKVTVNLSHKLKQQARGTQGQGAGRGRRTLRKRRVGKRAVEDLLLGHTTASHSSKIDREPLKNLDEEWDGEKASPMTPVHIGVAADVSNSAEEVESDYDHTQAVEYDQGNWEVGFNGVPPNRWSTDLVGMSDEDVDASEDDNDNGIEENEDEDSEADVMSEGSDGMGNRVVNVGGSYSALSEDSSD 1751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00447 1751 MobiDBLite consensus disorder prediction 19 44 - -
Phco11g00447 1751 MobiDBLite consensus disorder prediction 1225 1255 - -
Phco11g00447 1751 SUPERFAMILY Homeodomain-like 25 94 IPR009057 -
Phco11g00447 1751 Pfam Homeodomain 38 94 IPR001356 GO:0003677
Phco11g00447 1751 ProSiteProfiles 'Homeobox' domain profile. 35 95 IPR001356 GO:0003677
Phco11g00447 1751 SMART testlast3 547 606 IPR018501 -
Phco11g00447 1751 SMART HOX_1 37 99 IPR001356 GO:0003677
Phco11g00447 1751 MobiDBLite consensus disorder prediction 1697 1724 - -
Phco11g00447 1751 MobiDBLite consensus disorder prediction 1571 1585 - -
Phco11g00447 1751 Pfam HB1, ASXL, restriction endonuclease HTH domain 729 797 IPR007759 GO:0006355
Phco11g00447 1751 MobiDBLite consensus disorder prediction 1 48 - -
Phco11g00447 1751 MobiDBLite consensus disorder prediction 1 18 - -
Phco11g00447 1751 ProSiteProfiles HARE-type HTH domain profile. 729 798 IPR007759 GO:0006355
Phco11g00447 1751 CDD homeodomain 40 95 IPR001356 GO:0003677
Phco11g00447 1751 MobiDBLite consensus disorder prediction 1571 1599 - -
Phco11g00447 1751 MobiDBLite consensus disorder prediction 1529 1551 - -
Phco11g00447 1751 Gene3D - 21 96 - -
Phco11g00447 1751 Coils Coil 372 478 - -
Phco11g00447 1751 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 938 981 IPR028942 -
Phco11g00447 1751 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 13 1751 IPR044977 GO:0006357
Phco11g00447 1751 Pfam DDT domain 549 603 IPR018501 -
Phco11g00447 1751 MobiDBLite consensus disorder prediction 1228 1255 - -
Phco11g00447 1751 ProSiteProfiles DDT domain profile. 547 606 IPR018501 -
Phco11g00447 1751 MobiDBLite consensus disorder prediction 95 139 - -
Phco11g00447 1751 MobiDBLite consensus disorder prediction 826 877 - -
Phco11g00447 1751 MobiDBLite consensus disorder prediction 386 430 - -
Phco11g00447 1751 MobiDBLite consensus disorder prediction 830 853 - -
Phco11g00447 1751 Coils Coil 3 23 - -
Phco11g00447 1751 MobiDBLite consensus disorder prediction 95 109 - -
Phco11g00447 1751 MobiDBLite consensus disorder prediction 1691 1751 - -
Phco11g00447 1751 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1118 1190 IPR028941 -
Phco11g00447 1751 MobiDBLite consensus disorder prediction 854 877 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00447 Phco-Chr11 3025508 3035290 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Phco11g00447 WSD 5e-15 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00447 11 3025508 3035290 Phco11g00447 11 3025508 3035290 ECH
Phco4g02660 4 47931137 47940795 Phco11g00447 11 3025508 3035290 PCT