Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00434 ATGAAGGAACAGCTGTTACGGTGGTCTGAGCTATACGTGGTTACTCATTGTGGGTCCCGCTTTTTGACGGCTAGATTTGAGTTTAGGGGGAGTGGGTGTAGCGTGCGAAAGAAAGGGACTAGGTTTATCGGAGCGACACGTCGGAGAAAAGACGTGGCGGTGAGTGGGATCCACCTTTGGAAGCAGGATTCTGACGTGCACGCCAGCGGAGCATCCCTGAATCATTGTGGTGTTGTGTGTGTTCCTTACCGTTTGTATTGTGTTGTCACATATCATCATGAGTTTGGGTTTCTATGTGTATCTCTGCGCCCTTGCTTGATTCCCGATTCGAATCGAATTAGGGGTTTCCTTCTCATTAACCTCTCTCTCTGCACGTTCAAATCCAATCCAATGTCTCTCCCTGATTCTCCTGGGCCCGATGATACCGAAACCGATCCATCCGAAGACGAAGAGCAAGTCGAAGAAGAAATAGAGGAGGAGGAGGAGGAAGCTGAGGAAGAAGTGGAAGAGGAGGAGGAGGAAGCTGTGGAAGAAGTGGAAGAGGAGGAGATTGAGGAAGAAGTAGAAGAGGAAGAGGTTGAGGAAGTAGATGAGGAAGAAGTGGAGGAGGAAGAGGTCGAGGAAGTAGAGGAGGAAGAGGGAGAACAAGAAGTAGAGGAAGTGGAGGTAGAAGAAGAAGAAGAAGTAGAAGAAGTTGAGGTAGATGAAGAGGAAGAGGGAGAACAGGAAGTAAAAGAAGGGGAGGAAGGAGAAGAAGAGAAACAAAAACAAGAAGAAAGAGTGGAGGATAAGAAAGAAAGGCAACAACAGAAACAAAAAGAAGCAGTGGAGGATGAGAAGGAAGGTCAACCACAACAACAACAAGAAGCAGTGGAGGAGCAGAAGAAAGAGCAACAACAACAAGAAGAAGCAGTGGAGGAGAAGGAGAAAGAGCAACAGCAGCAACAAAAAGAAGCAGTAGAGGAGAAGAAGAAAGAGCAACAATTGCATCAGGAAGAAGCAATGGAGGAGAAGGAGGGACGACAAAAAGAAGAAGAAGTGGGGGAGGACAAGGGTCGGAAAGATTTGAGCCTACATATAGAGTCTAAGGAGCAAGACAAAAACTTGGGGCCAGATTCTTCTGTGGCTGAAAACTCTGACGTAATTCCATCATCTAGTGTGCATTGCATGGAAGAGAATGATAACATGCTCAAAATATCTGTTCCTTCACGTGAGATACTGACATCGAAAAAGGAAGAGTTTCACCTGAAATATGACATTTCAAGTCATTCGAAATCAAGAGAAAATCTGACTTCTGTTGAAAATAGCAGAAGTAAAGGATTAGAAGTTGACAGTGAAAATGCTGGATCCCTTCTGCAGAAGGAAAAACACAGGGGATACAGCTTGTTAGGTTGCAATAGCAAAGCTAATTTATGTGATGATAATGATATTAATTCTGGGGCCAGGGCTTCCAAACCATCTAGTGATACTGGACAAGATATGGTCATTGGCCTCTTTCCCAAAGATTGTCTTGTTGAGGATGCTAATGGTGGTCAGAATTCTAGGAACAATATCACACAGTTAGAGATGGAGTCAAGGGATGATATGAAGCAAATGCTGACAAGGACTAGAAGTCTGTCTCCCAGTGCTGAGAATAAAAACAGAAACAAACGACCAAAAATTATATGTGATTTTTTTGCTAAAGGATGGTGTATCAGAGGTAGTTCTTGTAGCTTTCATCATATAAAAGATAATGTGGATAAGACGGATCAGGAGGCTGAAGCTGACTTAGTTACTGTTCATCAGAAAAGAAAATTGAAAATGGAAGAAGGTGTTAGGGAAAATGTTCAGAGAATAAGGATGAATGAGCAAGAAGAAACCCCTAGTTGGCATCCATCTCAAGAAAAACAGAACTTTAAGCTGAGGGACAACTTGTTTCCAGAGAATAGATTTGCATTTAGTTCAACAAGCAATTATTTCAGCCCGAATCAGGATGGAATGGCCACTCTTCGGAACCAACATATGTACAAAGGATATGCTTCTGCTCTTTTGAGCCATTCACCAAATTCAAGGCAGGAAGATTTTCCTCTAGTTAGTTCGTCCAGGGTTCCATCTTATCCCACTGGATATAAATCAAAAATCTGTTCTTATGATTGGGAACCTTCTGTGCCCTTCCGGCCATCCTTTTTTATTACTTCCATGAATGTATCATCTCCTGGAGATCTTTACGACCCTCTTCGAGATAGCATTGAGATACCTAATATAGGGGATGGGTCTTTGAAGGCTTCCCTTTTAATTCAAGGATCTGACGGACAGGCTTCAACACAGGCTCCGATATATGGTGATTCTGCTGTAGTTGGGAAACACTTGTCCAGTCTTAATGATGACAAAAGTTCTGTATCTTCTCATAATAATAAATTTTATGAAACCAAGCCAAACAAAAATTCTGTTCCTCATGAAAAAGATTATCTTCCTACTGAAACAGAAATAACATCGGGAGCTTATGTAAACTATCAAAATGGTAAAATTGGCACAGGACAAAATACCTTTGGTGTTGCAGATAGTACAAAAAAAGAGGGAGACATGACTGAGCATGATGCTAGACATCACAGCGAAGGCTCAGGGCACAAAAAAAAGAGAGGAGACAGGGATAGGAAAAATCATGAAATGGATGTTGACTTTCCGATAGATGGCAGCATGCAGAAGGAATTGAAGGCACTAAAAATGTTACGTGCAGCTCTTGTTGATCATGTAAAAGAGTTGTTAAAACCAGTTTGGCATGAGGGTCGTCTCAGTAAGGATGAATATATTATGATAGTCAGAAAATCAGTTGACAAGGTTGTTAGCAGCATAGAGCCCCATCAGATTCCGACCATAGATACTGCCAAGCAATATGTTTCTTCAAGTCGGGTGAAAATTGCAAAGCTGGTCAATGGATATGTCAACAAATATGGCAAATCTTGA 2943 0.4207 MKEQLLRWSELYVVTHCGSRFLTARFEFRGSGCSVRKKGTRFIGATRRRKDVAVSGIHLWKQDSDVHASGASLNHCGVVCVPYRLYCVVTYHHEFGFLCVSLRPCLIPDSNRIRGFLLINLSLCTFKSNPMSLPDSPGPDDTETDPSEDEEQVEEEIEEEEEEAEEEVEEEEEEAVEEVEEEEIEEEVEEEEVEEVDEEEVEEEEVEEVEEEEGEQEVEEVEVEEEEEVEEVEVDEEEEGEQEVKEGEEGEEEKQKQEERVEDKKERQQQKQKEAVEDEKEGQPQQQQEAVEEQKKEQQQQEEAVEEKEKEQQQQQKEAVEEKKKEQQLHQEEAMEEKEGRQKEEEVGEDKGRKDLSLHIESKEQDKNLGPDSSVAENSDVIPSSSVHCMEENDNMLKISVPSREILTSKKEEFHLKYDISSHSKSRENLTSVENSRSKGLEVDSENAGSLLQKEKHRGYSLLGCNSKANLCDDNDINSGARASKPSSDTGQDMVIGLFPKDCLVEDANGGQNSRNNITQLEMESRDDMKQMLTRTRSLSPSAENKNRNKRPKIICDFFAKGWCIRGSSCSFHHIKDNVDKTDQEAEADLVTVHQKRKLKMEEGVRENVQRIRMNEQEETPSWHPSQEKQNFKLRDNLFPENRFAFSSTSNYFSPNQDGMATLRNQHMYKGYASALLSHSPNSRQEDFPLVSSSRVPSYPTGYKSKICSYDWEPSVPFRPSFFITSMNVSSPGDLYDPLRDSIEIPNIGDGSLKASLLIQGSDGQASTQAPIYGDSAVVGKHLSSLNDDKSSVSSHNNKFYETKPNKNSVPHEKDYLPTETEITSGAYVNYQNGKIGTGQNTFGVADSTKKEGDMTEHDARHHSEGSGHKKKRGDRDRKNHEMDVDFPIDGSMQKELKALKMLRAALVDHVKELLKPVWHEGRLSKDEYIMIVRKSVDKVVSSIEPHQIPTIDTAKQYVSSSRVKIAKLVNGYVNKYGKS 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00434 980 MobiDBLite consensus disorder prediction 141 248 - -
Phco11g00434 980 MobiDBLite consensus disorder prediction 419 450 - -
Phco11g00434 980 MobiDBLite consensus disorder prediction 850 864 - -
Phco11g00434 980 SUPERFAMILY CCCH zinc finger 550 574 IPR036855 GO:0046872
Phco11g00434 980 Coils Coil 287 337 - -
Phco11g00434 980 MobiDBLite consensus disorder prediction 839 886 - -
Phco11g00434 980 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 147 661 - -
Phco11g00434 980 MobiDBLite consensus disorder prediction 129 384 - -
Phco11g00434 980 MobiDBLite consensus disorder prediction 787 814 - -
Phco11g00434 980 Coils Coil 147 238 - -
Phco11g00434 980 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 555 574 IPR000571 GO:0046872
Phco11g00434 980 Coils Coil 247 281 - -
Phco11g00434 980 ProSiteProfiles Zinc finger C3H1-type profile. 550 577 IPR000571 GO:0046872
Phco11g00434 980 MobiDBLite consensus disorder prediction 787 805 - -
Phco11g00434 980 MobiDBLite consensus disorder prediction 249 370 - -
Phco11g00434 980 Gene3D - 541 625 - -
Phco11g00434 980 SMART c3hfinal6 551 576 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00434 Phco-Chr11 2900012 2909351 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phco11g00434 zf-CCCH 5.9e-06 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00434 11 2900012 2909351 Phco11g00434 11 2900012 2909351 ECH