Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00428 ATGGACAGAAGAGAGATACCAAGTCTCATATCTGTTCTTTGTCTGTTTACTCTTTGTTTTCAAGGATTCCTTGGAACCAGCAAAATGTCGGGTAACTGTGAGAAAATGGTAGTCATCCCTCCAACGACCAACCAATGGCCACAGGTGGATGATCAGAAGGTCTTGATGGGTTCCTTCGGTGGAAGTAACAATAGTAAGGTAATGGAAAAACCAGATCAAGAGCTTTTGCAGCAGCAGCTGCAACAACAAACCCTCAAGTGCCCGCGTTGTGACTCATCAAACACTAAGTTCTGCTACTACAACAACTACAGTTTGTCTCAGCCTCGACACTTCTGCAAAGCCTGCAAGCGCTATTGGACAAGAGGTGGAACCCTCAGGAACGTTCCTGTTGGTGGGGGGTGCAGAAAAAACAAGCGTGTCAAGCGTCCAATAACAATCTCTTCTTCTGCTGCCATTGAAACTGCTTCTTCTTCTAATTCTTCTTCTGCTCTCACTGCTGCTTCGCAACCCCAGATCGACACTGCTTCAACCTCGAATCACATCAACTCTTTGTTTTACGGGTTGCCGACTAGCTCCAGCGATGTGAATCTTCCACTCGTCCCTAGGTTTGGTTCCAGAATCTCCAGTTCCAGGTTTGATCTTCAGCTGAATAATGCCCTTGGATTAGGTTTTTCATCCGGGGTTGCGTCCAATGAAGCTAGTGAGAATAACAGTTTTAGAAACGGGTTTGGTTCAAATAACGCGCTTCTTTCAAGTTATAATTCCATCTTTGGTTCCTCTTCAAGTTCTACATCCACTACTCCAGCTATGCCTTCCCTGTTGAGCTCTACTTTTCTTCAACAGAAGTTCATCGGTTGTGGATTGAAAGATGGTGTTGATAGCAACACTTTCCAGCATGGCTTAGGCTTAACCCCACTAGAGCAGTTGCAAATGCCTAGTGATAACAGTGAGGCAGGGATGGTGGCTTTAAAAGATGTGAAAGTAGAATTAGGACAAAACAACAGGTTGGAGTGGAATGGTGCTTGTCAAAACCAGATCCAGCATGTGGGCATGTACGATCCTTCACTTTATTGGAATAATTCAGCAACAGCTTTGGGTGTTTGGAACGATCAAGCTGCTAATATCGGTTCTTCAGTCACTTCTCTGATCTAG 1152 0.4479 MDRREIPSLISVLCLFTLCFQGFLGTSKMSGNCEKMVVIPPTTNQWPQVDDQKVLMGSFGGSNNSKVMEKPDQELLQQQLQQQTLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPITISSSAAIETASSSNSSSALTAASQPQIDTASTSNHINSLFYGLPTSSSDVNLPLVPRFGSRISSSRFDLQLNNALGLGFSSGVASNEASENNSFRNGFGSNNALLSSYNSIFGSSSSSTSTTPAMPSLLSSTFLQQKFIGCGLKDGVDSNTFQHGLGLTPLEQLQMPSDNSEAGMVALKDVKVELGQNNRLEWNGACQNQIQHVGMYDPSLYWNNSATALGVWNDQAANIGSSVTSLI 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00428 383 ProSitePatterns Zinc finger Dof-type signature. 87 123 IPR003851 GO:0003677|GO:0006355
Phco11g00428 383 ProSiteProfiles Zinc finger Dof-type profile. 85 139 IPR003851 GO:0003677|GO:0006355
Phco11g00428 383 Pfam Dof domain, zinc finger 83 139 IPR003851 GO:0003677|GO:0006355
Phco11g00428 383 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 73 254 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00428 Phco-Chr11 2837210 2839053 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Phco11g00428 zf-Dof 2.9e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00428 11 2837210 2839053 Phco11g00428 11 2837210 2839053 ECH
Phco4g02635 4 47717652 47718853 Phco11g00428 11 2837210 2839053 PCT