Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00427 ATGGAGCACGGAGGTGGAGAAGGAGGTGACATGAACAAACTACCTCAGGATTCAAGAATGAAGGAGATGCAGCAAGGGGATGCACAGCCTCAGGTTCAGGCCCCTCAACAACCCCAAAAGTGTCCTCGATGCGACTCTCTTAACACCAAATTTTGCTATTACAACAACTATAGCTTGTCACAGCCTCGTTACTTTTGCAAAACATGCAGGAGGTACTGGACTCAAGGTGGAACCTTAAGGAACGTCCCCGTCGGTGGTGGTTGCCGCAAGGGGAAGCGCGCCAAGAATTCCAATCCATCATCATCGGATAATTCCTCTTCTCGGTCGCTTCCGCAACAACAACAATCACAAGACGTGGTGGTTCAAACCCAACCACCACCCTTAACAACGGTGGTGAGGGCTAAAGATCCTTCTTCAGTTTTGGCTTCACCTTTCTACCAAAGTGGTGGGTACTTGTCTTCTCTGGCTGCTATGCATTCGCTCAATCCATCATCACACCCTTTTGATCAGTCTTTGAATAGTGACGCCTTGCGTTCTTCCAATTTGGGCCTTCTATCTGGTTTCAATGTTCAGCGGCCAACTGGGTCAATTGGGACAATTCGTCCGCCGCAATTGTATCAAATGGGCAGTGGTCAAAGGGAGGTGGTGTCTCTATATGATCAAGGTTTGGTTAATCCATCATCCAGCATGGCTAATACCAATACCAATAGCAGTGGTGTTTCTCACCATGATTGGCCTCATAGCTTCATCAATAATAATACTAATGCCAGCAATAGAGCCTCTGATGCCTCTTTGTGGAGCACCATCAGTACCACTATTGGTGGTAACTCCGAGAGGACTAGTGCTGGTACTGTTTCTGGGTCGTCTTTGGTCCAAAATCAATGGCCTGATATTCAAGGGTATGGCCCTCCGCCGTGA 918 0.4804 MEHGGGEGGDMNKLPQDSRMKEMQQGDAQPQVQAPQQPQKCPRCDSLNTKFCYYNNYSLSQPRYFCKTCRRYWTQGGTLRNVPVGGGCRKGKRAKNSNPSSSDNSSSRSLPQQQQSQDVVVQTQPPPLTTVVRAKDPSSVLASPFYQSGGYLSSLAAMHSLNPSSHPFDQSLNSDALRSSNLGLLSGFNVQRPTGSIGTIRPPQLYQMGSGQREVVSLYDQGLVNPSSSMANTNTNSSGVSHHDWPHSFINNNTNASNRASDASLWSTISTTIGGNSERTSAGTVSGSSLVQNQWPDIQGYGPPP 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00427 305 MobiDBLite consensus disorder prediction 18 40 - -
Phco11g00427 305 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 25 237 IPR045174 GO:0003700|GO:0006355
Phco11g00427 305 MobiDBLite consensus disorder prediction 274 305 - -
Phco11g00427 305 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
Phco11g00427 305 MobiDBLite consensus disorder prediction 94 121 - -
Phco11g00427 305 Pfam Dof domain, zinc finger 37 93 IPR003851 GO:0003677|GO:0006355
Phco11g00427 305 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Phco11g00427 305 MobiDBLite consensus disorder prediction 274 296 - -
Phco11g00427 305 MobiDBLite consensus disorder prediction 1 40 - -
Phco11g00427 305 MobiDBLite consensus disorder prediction 83 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00427 Phco-Chr11 2821058 2821975 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Phco11g00427 zf-Dof 9.9e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00427 11 2821058 2821975 Phco11g00427 11 2821058 2821975 ECH
Phco4g02634 4 47703751 47704554 Phco11g00427 11 2821058 2821975 PCT