Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00421 ATGAGAAGCGTTATCTTTTTTCATGGGAATGAGTATTCTCAGCTCTTGAAGTTGAATTACCACACCAATTGCACGAATACCACTGATATGGAGAACAACCCTAGTTCATCAGTTGATAGAAAACTCACTGAGAGGAATAGAAGAAATCAAATGAAAGCTCTCTTCCGCAAGCTCAACTCACTTGTGCCTCATCAAAGGACAAAGGCGGTTTCACTCCCGGATCAGCTAGAAGAAGCAACAAACTACATAAAGAAATTACAGATGAATATGGAGAAAATGAAGAAGAAGAAGAGCATGCTACTAGGAATAATAGAAAGGCCAAATGTGAGAATGAATGGTGGAGGAGAGAGCTTAGGGCTAAAATCTCCAAGGATTGAGATCCAACAAATGGGTTCAGCCTTAGAGGTTGTTCTAATAACTGGGTTGGATTCTCAGTTCATGTTCGGTGAAACCATTCGTGTTCTTCATGAAGAAGGAGTAGATATTGTTAACGCCAGTTATAATGTTATCGAAGATGAAGTTTTCCATTCAATACACTGTCAGGAGGAGAAATCTGCCAACAGAGCTGCCAGAATATCTGAGAGGCTAAAGAACTTCATCTATGATTCTACCTACGTACTGTGA 624 0.399 MRSVIFFHGNEYSQLLKLNYHTNCTNTTDMENNPSSSVDRKLTERNRRNQMKALFRKLNSLVPHQRTKAVSLPDQLEEATNYIKKLQMNMEKMKKKKSMLLGIIERPNVRMNGGGESLGLKSPRIEIQQMGSALEVVLITGLDSQFMFGETIRVLHEEGVDIVNASYNVIEDEVFHSIHCQEEKSANRAARISERLKNFIYDSTYVL 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00421 207 Coils Coil 76 96 - -
Phco11g00421 207 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 34 201 - -
Phco11g00421 207 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 41 109 IPR036638 GO:0046983
Phco11g00421 207 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 35 86 IPR011598 GO:0046983
Phco11g00421 207 Gene3D - 30 112 IPR036638 GO:0046983
Phco11g00421 207 Pfam Helix-loop-helix DNA-binding domain 41 87 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00421 Phco-Chr11 2777964 2778977 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco11g00421 HLH 5.7e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02624 4 47570882 47578787 Phco11g00421 11 2777964 2778977 PCT