Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00420 ATGGGGGAAGATAGTTATTCTTGGATTAGGAGGACAAAGTTTTCACACACAGTGTGCCATCGTTTGGATCCATCTAGATTAGGTCATGTTCCTATCAGCATTCAGTCAGAGGAAAAATCAAGGCCCGCCTCACAGGCTCAGAGGCACCCCATAACGAACAAGCAGAGATCTTTGTCACCCTTACCTGAGACTTTTCTTTCTGAGGCCTTCAGGGAAGCTAAACATGATCAGAAGAGGTTCTCCACACCGAATCCCCGGAGAGGTAACAGGGTTATGGGGAAGGTGGTGAACAAGGATTCTCGAGAGACTAAGGAATCAAGTTCAAAGTTGCCTTCCCGTAGTCCAAATAGGCAGGTGAAGTCAAAGCAAAACAAGGATGCAGCATGGACTAAGTTTTTGGATAATGGTGGAAGCAAGATTACTGCTGTCGAAACAGCTGAAGAGTGGAATATTGACATGTCCCAACTGTTTTTTGGCCTAAAGTTTGCTCATGGAGCACATAGCCGACTTTACCATGGTGTATATAAGGATGAATCAGTTGCTGTTAAAATCATTATGAAACCTGAAGACGATGAAAGTGGAGATTTGGCTTGTCGATTAGAGAAACAGTTCGTTAGAGAAGTTACCCTTTTATCTCGCCTTCACCATCAAAATGTTATAAAGTTCTCAGCAGCATGCAGAAAGCCACCTGTTTATTGTATCATCACAGAGTATCTTTCGGAAGGTTCCTTGAGGGCTTATTTGCGTAAGTTGGAGCGCCAAACTATTTCTCTAGAAAAACTATTAACTTTTGCCTTGGATATTGCTCGCGGTATGGAATATATACATTCTCAAGGTGTCATTCATCGAGACCTTAAGCCAGAGAATGTCCTCATCAACGAAGGCTATCGCCTTAAAATTGCTGATTTTGGCATTGCATGCGAGGAAGCCTCTTGTGACTTATTGGCTGATGACCCTGGCACCTACCGTTGGATGGCACCCGAGATGATCAAACAGAAATCCTATGGGAAAAAGGTTGATGTCTACAGTTTTGGGCTTATCTTATGGGAGATGTTGACTGGAACTATTCCATATGAGGATATGAATCCAATACAGGCTGCTTTTGCCGTTGTAAACAAGAATTCAAGGCCAGTTATTCCATCAGACTGTCCACCTGCTATGCGAGCTTTAGTTGAGCAATGCTGGAGCCTGCAACCAGATAAGAGGCCTGAGTTCTGGCAGATTGTGAAGATATTAGAGCAATTTGAATCTTCACTTGCCCGTGATGGAACCCTGACTCTGGTGCCAAACCCTTGTTGGGATACTAAAAAAGGGCTTCTTCATTGGATTCAAAAGCTTGGTCCTGTGCATCAAAATAGTGGCCCTGTGCCTAAACCCAAGTTCACATGA 1389 0.437 MGEDSYSWIRRTKFSHTVCHRLDPSRLGHVPISIQSEEKSRPASQAQRHPITNKQRSLSPLPETFLSEAFREAKHDQKRFSTPNPRRGNRVMGKVVNKDSRETKESSSKLPSRSPNRQVKSKQNKDAAWTKFLDNGGSKITAVETAEEWNIDMSQLFFGLKFAHGAHSRLYHGVYKDESVAVKIIMKPEDDESGDLACRLEKQFVREVTLLSRLHHQNVIKFSAACRKPPVYCIITEYLSEGSLRAYLRKLERQTISLEKLLTFALDIARGMEYIHSQGVIHRDLKPENVLINEGYRLKIADFGIACEEASCDLLADDPGTYRWMAPEMIKQKSYGKKVDVYSFGLILWEMLTGTIPYEDMNPIQAAFAVVNKNSRPVIPSDCPPAMRALVEQCWSLQPDKRPEFWQIVKILEQFESSLARDGTLTLVPNPCWDTKKGLLHWIQKLGPVHQNSGPVPKPKFT 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00420 462 PRINTS Tyrosine kinase catalytic domain signature 274 292 IPR001245 GO:0004672|GO:0006468
Phco11g00420 462 PRINTS Tyrosine kinase catalytic domain signature 236 249 IPR001245 GO:0004672|GO:0006468
Phco11g00420 462 PRINTS Tyrosine kinase catalytic domain signature 320 330 IPR001245 GO:0004672|GO:0006468
Phco11g00420 462 PRINTS Tyrosine kinase catalytic domain signature 383 405 IPR001245 GO:0004672|GO:0006468
Phco11g00420 462 PRINTS Tyrosine kinase catalytic domain signature 339 361 IPR001245 GO:0004672|GO:0006468
Phco11g00420 462 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 78 419 - -
Phco11g00420 462 FunFam Serine/threonine-protein kinase isoform 1 146 240 - -
Phco11g00420 462 SUPERFAMILY Protein kinase-like (PK-like) 141 412 IPR011009 -
Phco11g00420 462 MobiDBLite consensus disorder prediction 92 108 - -
Phco11g00420 462 MobiDBLite consensus disorder prediction 36 126 - -
Phco11g00420 462 Gene3D Phosphorylase Kinase; domain 1 144 240 - -
Phco11g00420 462 MobiDBLite consensus disorder prediction 68 83 - -
Phco11g00420 462 FunFam serine/threonine-protein kinase HT1 241 431 - -
Phco11g00420 462 ProSiteProfiles Protein kinase domain profile. 156 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00420 462 MobiDBLite consensus disorder prediction 109 125 - -
Phco11g00420 462 SMART serkin_6 156 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00420 462 MobiDBLite consensus disorder prediction 37 62 - -
Phco11g00420 462 CDD STKc_MAP3K-like 163 412 - -
Phco11g00420 462 Pfam Protein tyrosine and serine/threonine kinase 161 412 IPR001245 GO:0004672|GO:0006468
Phco11g00420 462 Gene3D Transferase(Phosphotransferase) domain 1 241 426 - -
Phco11g00420 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 280 292 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00420 Phco-Chr11 2770918 2773441 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Phco11g00420 PK_Tyr_Ser-Thr 5.8e-64 CL0016