Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00391 ATGCAGGCAGAATTTGCCAAATCTCAACTGAATGTAAACAATGAAACCCACAAGCCCAATAAGATTGCAGAGTATACCAGAATCATTATGACTTGTTGTGGCTGCTTTGGAGCCAAATCTGCTAAGAAAAGACGCTCTTCTAATGTTAATGGAGAAATTGATGGTTATCCCCTTGATAATGTCAGGCAATTTTCTGATAAAGAACTGAGATTGGCAACTGATAATTATCACTCAAACAATAAGATAGGACGAGGAGGTTTTGGAACTGTTTACCAGGGAACCTTAAGAGATGGAAGACGTATAGCAGTGAAGACTCTCTCAAATTGGTCAAAGCAGGGTGTTCGAGAATTTTTGACTGAAATCAAAACTTTGTCAAATGTTAAACATCCAAACCTTGTTGAATTGATTGGATTCTGCATCCAAGGACCTAGTCGTACATTAGTCTACGAGTATGTGGAAAATGGAAGCCTTAATAGTGCACTACTTGGCACAAGGAATGAAAAGATTAAACTAGACTGGAGAAAAAGATCTGCTATCTGTGTAGGTACTGCTAAGGGTCTTGCTTTTCTGCATGAAGAACTTTCACCACCAATTGTGCATAGAGACATCAAAGCTAGTAATGTACTACTTGACAAAGATTTCAATCCCAAAATAGGTGATTTTGGGTTGGCTAAACTATTTCCAGATGGTATCACTCACGTTAGCACAAGAATTGCTGGAACAGCTGGTTACTTAGCACCGGAATATGCAATAGGTGGCCAGTTAACCAAGAAAGCTGATATATACAGCTTTGGGGTTCTTGTGCTTGAAATAGTTAGTGGCAGAAGCAGTGCCAGGAGAACAAACGGAGGAGGATCACACAAATTCCTCTTGGAATGGGCCTGGCAACTATATGAGGAAGGGAAATTGTTGGAGTTTGTGGATCCAGACATGGAAGAGTTTCCTGAGGAAGAGGTAATGAGATACATGAAGGTTGCACTTTTCTGTACACAGTCAGCAGCAAGTAGAAGGCCTTTGATGATACAAGTTGTTAATATGCTATCAAAGACAATCCAACTCAATGAGAAAGAACTTACAGCACCAGGATTATTCATAGATGAAGGAGAATCTTCTGGAAGGAACCCACACCCTGTTCCTTTTATTACCTCTACGCATGCTGCTATTACTCAGGTCACCCCAAGGTGA 1185 0.4042 MQAEFAKSQLNVNNETHKPNKIAEYTRIIMTCCGCFGAKSAKKRRSSNVNGEIDGYPLDNVRQFSDKELRLATDNYHSNNKIGRGGFGTVYQGTLRDGRRIAVKTLSNWSKQGVREFLTEIKTLSNVKHPNLVELIGFCIQGPSRTLVYEYVENGSLNSALLGTRNEKIKLDWRKRSAICVGTAKGLAFLHEELSPPIVHRDIKASNVLLDKDFNPKIGDFGLAKLFPDGITHVSTRIAGTAGYLAPEYAIGGQLTKKADIYSFGVLVLEIVSGRSSARRTNGGGSHKFLLEWAWQLYEEGKLLEFVDPDMEEFPEEEVMRYMKVALFCTQSAASRRPLMIQVVNMLSKTIQLNEKELTAPGLFIDEGESSGRNPHPVPFITSTHAAITQVTPR 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00391 394 SMART serkin_6 76 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00391 394 Pfam Protein kinase domain 76 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00391 394 FunFam Putative LRR receptor-like serine/threonine-protein kinase 152 359 - -
Phco11g00391 394 ProSitePatterns Protein kinases ATP-binding region signature. 82 104 IPR017441 GO:0005524
Phco11g00391 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Phco11g00391 394 ProSiteProfiles Protein kinase domain profile. 76 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00391 394 Gene3D Phosphorylase Kinase; domain 1 48 151 - -
Phco11g00391 394 SUPERFAMILY Protein kinase-like (PK-like) 53 347 IPR011009 -
Phco11g00391 394 CDD STKc_IRAK 82 349 - -
Phco11g00391 394 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 38 371 - -
Phco11g00391 394 Gene3D Transferase(Phosphotransferase) domain 1 152 360 - -
Phco11g00391 394 FunFam cold-responsive protein kinase 1 47 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00391 Phco-Chr11 2519599 2524181 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco11g00391 Pkinase 1.1e-46 CL0016