Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00382 ATGGGCTTGAGTTCTAAGCAGGTTTCTAATAGAGGGCTTGATTGGGACCAGAATTTGCTGCAGGCTCAAAATTTGGAGCTCCCAAAGCCTACTCCTATGAGGAAACAACAGCAACAAACTCAGCCATCAGAGCCTTTGAAGTGTCCAAGATGTGACTCCATTAACACCAAATTCTGTTACTACAACAACTACAACAAGTCTCAACCTCGCCATTTCTGCAGAGCTTGCAAGAGGCACTGGACTAAAGGTGGAACTCTGCGCAACGTTCCTGTTGGTGGTGGTAGAAAGAATAAGCGAGTCAAGAAATCAACCTCAGCTACAACCACCACTTCAAATGGCAACATGGATGGTGAGTTGAGAACCCACGTCACAATTCCTCCTCTTGCAGTGGAGGATCATAAAACCACACCTTCCTCTCTCTACCGATCCTTGTGCTTGCCACAACAGAATCTGACGAGTACCAAAGTTTCAGAAGGCAAAGACTTTGGTATTGGCAATGGAATCTTTCTGAGTTCAACTGTGCCTTTACCTCAAAACCAAAACCTTCTCTTCCCTTTCACAACCTCAAACTCTTTTGACACAAACACATGTGCAGTATCCAACTCTTTGCAATCTTCCAGTGTGTATGACTACGGTGAAGAGTTTAAAATACTGGAGGAGCCAACCGTCAACAGTACAATTCCCAGCACTAGTGGTGGCACCAGGACACAGCCATGGGAGATAGCAGCAACGAGTTCTGGTTTGGAAATGTCCAACTATTGGAGTTGGGAGGACATTGATTCCTTGGTCTCAACTGATCCAAATAATCCTTGGGATGATTCTGATATCAAACCCTGA 837 0.4504 MGLSSKQVSNRGLDWDQNLLQAQNLELPKPTPMRKQQQQTQPSEPLKCPRCDSINTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRVKKSTSATTTTSNGNMDGELRTHVTIPPLAVEDHKTTPSSLYRSLCLPQQNLTSTKVSEGKDFGIGNGIFLSSTVPLPQNQNLLFPFTTSNSFDTNTCAVSNSLQSSSVYDYGEEFKILEEPTVNSTIPSTSGGTRTQPWEIAATSSGLEMSNYWSWEDIDSLVSTDPNNPWDDSDIKP 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00382 278 ProSiteProfiles Zinc finger Dof-type profile. 46 100 IPR003851 GO:0003677|GO:0006355
Phco11g00382 278 MobiDBLite consensus disorder prediction 103 118 - -
Phco11g00382 278 Pfam Dof domain, zinc finger 45 98 IPR003851 GO:0003677|GO:0006355
Phco11g00382 278 MobiDBLite consensus disorder prediction 89 119 - -
Phco11g00382 278 ProSitePatterns Zinc finger Dof-type signature. 48 84 IPR003851 GO:0003677|GO:0006355
Phco11g00382 278 MobiDBLite consensus disorder prediction 26 47 - -
Phco11g00382 278 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 34 193 IPR045174 GO:0003700|GO:0006355
Phco11g00382 278 MobiDBLite consensus disorder prediction 26 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00382 Phco-Chr11 2486895 2487731 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Phco11g00382 zf-Dof 1.1e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02577 4 47102098 47103042 Phco11g00382 11 2486895 2487731 PCT