Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00371 ATGATGGCGGATGAGGGATTCGGTTACGCGTGCTTCTTGGGCGGTGACGGGAACGCCGCCGACGACGATAAGTTCTGCATCGATCTGGAAACCGTTATGAGCGTTCTCGACGAGGATACTGATCCTTCTGAGAGTAGTCCCGAGGATTTTTCATTAAAAAATATTTCACCTGGTGAATCTGGCATCCATGGTAGTTTTCTACTTCAAAATGGGAATTCTGTGCTTGAATGTGAACATGAAAACCAGGGACCTTCACCACAGACTTTCTCTTTCCCTAATGCTCTTGCTGGTGGTCACATGGACCATGAAGGTGATGATTTTTGCATCACAGAAAGGACAGAAGTTTCCAATTGTGAGATGCCTGCTTACATAGGCACAAGGTTCCCTGATCCTGAGGTGAATTCAAGCAATGTAGCTGTTTGTGGAGATAGTTTAAAACTGACTATGTGGAAGTGTGAGAATGATAGCCAAATCAAGCATGTAGGATATGGTGCAGAATCTGAACCTGCTTCACATGGCTCTATCATTGAGAATATTGATGTAAAATTTGATGATTATGAAACCTATATGAAAGACATAGTTGGACCTTCTGGTAAACAAGAAAATGACTCATGTACATCGTTTGTGGATGCTGATAGATCATCTCATGCTGCAACTTCAACTGATTCCTCTATTTGTCAAGGTTCCAATGTTCCCAATGATTTTAGTGACTATTATCCTTCTTTTAATATTTACCAAGGTATGGATGACAGACCTGCTCTTGCCAACACCTCTGATTGTTTGTTTAATGGTGTTTATCCTCACGTGTGGGAAAATGAAAAAATGACGAGGAACATGAAGGTTCATAAAATGGAGTTATTTACTGATACAAGTGGTGGCATGCATTCCATCATCAATGCGGGGATATCTTTCCAAGACACTCAATATACCTTCCCAGATAGTAGATATGCATCATGTTTTCCTGGTAACGTTCTTGTTAAAGACAGTGCATCAGTGCAACACTCAACTTGTGCTTCATATATTTCAAGCGAAGGTCAGTCGCTTATTGTCAAAACTGATAGAGATGGACTGATTATGCCCTACCAAAGTTCTGCTCACAGTGATGATGTTGAGTTCATTGTAGGTCAAGAGACGAAACAACTACCTGGTACTTTTCCTGCTGTTGGATCTGAGGGTAATGATTTATTCAAGGGTGAGGATAGTGTTACACTCACAATGACTGAGAAAGCCAAATATTATCAAGATGCTATTGGTGGATCTGGAAATTACTTTCCTGGAAGTATGGGAAATTTAAACTTAAAACCATTTGACAAATCTTTGTATAATGTCCAGACATCAATTGCCAGTGGGAAGTTGTATAATTGTGTTATGAGTGAAGGAGAGGGAAAGTTAATTGAACATAGAAGTATTGATTCTCAACTTTCAAAAGGAAGTATTGACAGATCCAATATTGAGGATGAATCTGATGTTTGTATTATTGAAGACATCAGTTACCCTGCACCTCTAAGTCGATCAGCAGAGCTTGGGAATTCTCTCAACACATTACAACCTTCTAGATGTGGTTATACTACTCATTCTTCTATGGTGGGAGTTATGAGACCCAAGGCACTTGACGAGCAGTACATATTACGAGTTGCATTGCAGGATCTTTCCCAACCAAAGTCAGAGGTTAGCCCACCAGATGGACTGCTGGCAGTTCCCCTTTTACGACATCAGAGAATTGCTTTATCATGGATGGTTCAAAAGGAGACTTCAAGTTTATACTGTTCTGGAGGAATTCTTGCAGATGATCAGGGTCTTGGAAAAACAGTGTCAACCATTGCTTTAATATTAAAGGAAAGACCTCCATTGCTGAATAAATGCAACCTTGCAAAGAATAGTGAATTAGAAACTTTGAATCTGGATGCAGATGATGATCAACTTCTTGAGGGTGGTATAGTGAAGAATGAATGTAATATGGTTCAGGATTTGTCTTGTAGAAATCCAAACAAGAACATGAATTTGTTAGTGCATTTAAAGGGGAGGCCATCTGCAGGAACCCTTGTTGTTTGTCCGACTAGTGTCCTACGGCAATGGGATGAAGAGTTGCACAGTAAGGTAACTGGCAAAGCAAATCTTTCTGTGCTAGTGTACCATGGTAGCAATCGAACAAAAGATCCTTATGAGCTTGCCAAGCATGATGTTGTTCTGACGACTTATTCAATTGTCAGCATGGAGGTCCCTAAGCAGCCTCTAGTTGACAAAGACGATGAAGAAAAAGGAACTTATGACGATCCTGCAGTATCAAGCAAGAAAAGGAAATGTCTTTCCACTTCTAAAAGTAGCAAGAAGGGATTGGACACTGCAATTCTTGACTCTGTTGCTCGACCTCTTGCAAAAGTGGCTTGGTTTAGAGTTGTCCTGGATGAGGCCCAGAGTATCAAGAACCACAGAACTCAAGTTGCAAGGGCTTGTTGGGGTCTTAGAGCGAAGCGTAGATGGTGTTTATCAGGGACTCCTATCCAGAATGCAATTGATGATCTCTATAGCTACTTCAGATTTTTAAGATATGATCCTTATGCTGTGTACACATCATTCTGTTCCACAATTAAGATCCCTATCAGCAAAAGTCCATCGAAAGGATATAGAAAGCTACAGGCTGTCTTAAAAACAATCATGTTACGGCGCACAAAAGGCACTCTTCTTGATGGGGAGCCTATCATTTCCTTGCCACCTAAATCTGTAGAGTTGAAAAAGGTGGAGTTTTCACAGGAGGAACGTGATTTCTATTCTAGACTAGAGGCTGATTCCCGAGCACAGTTTCAGGAATATGCTGATGCTGGAACTGTGAAGCAAAATTATGTTAACATTTTACTGATGCTTTTGCGCCTTAGACAAGCATGCGATCATCCCCTCCTTGTCAAGCGTTACAATTCTAACTCTCTCTGGAAATCTTCAGTTGAGATGGCAAAGAAGCTTACTCTAGAAAAGCGATTATCTCTACTAAATTGTTTGGAAGCTTCTTTGGCCCTCTGCGGTATCTGTAATGATCCTCCTGAAGATGCTGTTGTGTCAGTTTGTGGTCATGTTTTTTGTAACCAGTGCATTTGTGAACATCTTACTGGTGATGACAATCAGTGCCCCGCTACAAACTGCAAAATTCGACTAAGCATGTCTTCAGTGTTCTCCAAAGTCACATTGAATAGTTCTTTTTCTGATCAGGCTTGTAATAATTTGCCTGGTTACTCTGGTTGTGAAGTGGATGAATCTGAGTTTTGTTCTGAGAGTCAGCCATATAATTCTTCAAAAATTAGGGCTGCACTTGAGGTGTTACAGTCTTTGTCTAAACCACAATGCTGTGCTCCCCAAAGCATTTCTGTGCAGAGCACTCCTGGCGAAACTACTGATGGCCTCGGGAGCTCATCTTGTGCTGACCGATTGAAATCCTCAAGTGAATTCCCTGAGAATCAAAATGTGTTAGAGAGAAGCTCTAATAATTCAGTTGGTGGTGAGAAAGCTATAGTGTTTTCTCAGTGGACCAGGATGCTTGATTTACTTGAAGCATGTCTTAAGAATTCTTCAATTCAGTATAGAAGACTTGATGGAACAATGTCTGTTTCTGCCAGGGATAAAGCTGTTAAAGATTTTAACAACCTCCCTGAGGTTTCAGTTATGATTATGTCTTTGAAGGCTGCTAGTCTTGGTCTGAATATGGTTGCTGCCTGCCATGTTCTTATGCTAGATCTTTGGTGGAATCCTACAACTGAAGATCAGGCTATAGACAGAGCGCATCGTATTGGACAGACCCGTCCTGTCACAGTCTTACGGTTAACTGTTAGAGATACAGTTGAAGACCGTATTTTAGCTCTGCAGCAAAAAAAGCGAAAAATGGTTGCGTCTGCCTTTGGAGAGGATGGAACTGGTGGTCGTCAAAGTCGCCTTACAGTGGATGATCTAAAATACTTGTTCATGATGTGA 3957 0.4102 MMADEGFGYACFLGGDGNAADDDKFCIDLETVMSVLDEDTDPSESSPEDFSLKNISPGESGIHGSFLLQNGNSVLECEHENQGPSPQTFSFPNALAGGHMDHEGDDFCITERTEVSNCEMPAYIGTRFPDPEVNSSNVAVCGDSLKLTMWKCENDSQIKHVGYGAESEPASHGSIIENIDVKFDDYETYMKDIVGPSGKQENDSCTSFVDADRSSHAATSTDSSICQGSNVPNDFSDYYPSFNIYQGMDDRPALANTSDCLFNGVYPHVWENEKMTRNMKVHKMELFTDTSGGMHSIINAGISFQDTQYTFPDSRYASCFPGNVLVKDSASVQHSTCASYISSEGQSLIVKTDRDGLIMPYQSSAHSDDVEFIVGQETKQLPGTFPAVGSEGNDLFKGEDSVTLTMTEKAKYYQDAIGGSGNYFPGSMGNLNLKPFDKSLYNVQTSIASGKLYNCVMSEGEGKLIEHRSIDSQLSKGSIDRSNIEDESDVCIIEDISYPAPLSRSAELGNSLNTLQPSRCGYTTHSSMVGVMRPKALDEQYILRVALQDLSQPKSEVSPPDGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPPLLNKCNLAKNSELETLNLDADDDQLLEGGIVKNECNMVQDLSCRNPNKNMNLLVHLKGRPSAGTLVVCPTSVLRQWDEELHSKVTGKANLSVLVYHGSNRTKDPYELAKHDVVLTTYSIVSMEVPKQPLVDKDDEEKGTYDDPAVSSKKRKCLSTSKSSKKGLDTAILDSVARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYTSFCSTIKIPISKSPSKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKSVELKKVEFSQEERDFYSRLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWKSSVEMAKKLTLEKRLSLLNCLEASLALCGICNDPPEDAVVSVCGHVFCNQCICEHLTGDDNQCPATNCKIRLSMSSVFSKVTLNSSFSDQACNNLPGYSGCEVDESEFCSESQPYNSSKIRAALEVLQSLSKPQCCAPQSISVQSTPGETTDGLGSSSCADRLKSSSEFPENQNVLERSSNNSVGGEKAIVFSQWTRMLDLLEACLKNSSIQYRRLDGTMSVSARDKAVKDFNNLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRKMVASAFGEDGTGGRQSRLTVDDLKYLFMM 1318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00371 1318 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1139 1313 IPR001650 -
Phco11g00371 1318 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 661 749 - -
Phco11g00371 1318 CDD SF2_C_SNF 1162 1270 - -
Phco11g00371 1318 Gene3D - 663 749 IPR038718 -
Phco11g00371 1318 Gene3D - 762 890 IPR038718 -
Phco11g00371 1318 SMART helicmild6 1177 1260 IPR001650 -
Phco11g00371 1318 CDD DEXDc_SHPRH-like 568 889 - -
Phco11g00371 1318 ProSiteProfiles Zinc finger RING-type profile. 1005 1044 IPR001841 -
Phco11g00371 1318 Pfam Helicase conserved C-terminal domain 1158 1260 IPR001650 -
Phco11g00371 1318 ProSitePatterns Zinc finger RING-type signature. 1020 1029 IPR017907 -
Phco11g00371 1318 SUPERFAMILY RING/U-box 1002 1050 - -
Phco11g00371 1318 SMART ring_2 1005 1043 IPR001841 -
Phco11g00371 1318 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 897 1317 IPR027417 -
Phco11g00371 1318 Pfam Zinc finger, C3HC4 type (RING finger) 1005 1041 IPR018957 GO:0046872
Phco11g00371 1318 Pfam SNF2-related domain 588 966 IPR000330 GO:0005524|GO:0140658
Phco11g00371 1318 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 427 1317 - -
Phco11g00371 1318 Gene3D - 537 629 IPR038718 -
Phco11g00371 1318 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 583 851 IPR014001 -
Phco11g00371 1318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 998 1056 IPR013083 -
Phco11g00371 1318 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 553 889 IPR027417 -
Phco11g00371 1318 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 771 901 - -
Phco11g00371 1318 Gene3D - 1064 1317 IPR027417 -
Phco11g00371 1318 SMART ultradead3 564 866 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00371 Phco-Chr11 2395666 2403635 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phco11g00371 SNF2_N 8.5e-67 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02567 4 46951312 46959154 Phco11g00371 11 2395666 2403635 PCT