Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00362 ATGGGCAGCACCAAATTGGAGTTGCATGTTGGGATTTTTGTCATCTGCGTGGTGATTCTCGCAGGGACTTTCTGTGTTGGAGATACTGATATGGTTGATGTTGGTGCAATCAATAGTCTGTATGTTTCTCTGGGGTCGCCACCACTTCAAGGGTGGAAATCCGTGGGAGGAGATCCATGTGCAGAACTGTGGCAAGGTGTTGCTTGTGTCTTCTCCAACATAACTGCAATACACCTCGGAAGCATGAATTTGGGTGGACAGCTGGGCAGCAATTTGAATTTCCCATCCATTTTAGAATTGGATCTTGGTAACAACCACATTGAAGGGCCTATTCCATTTACTTTGCCCCCTACTTTGAGGAGCTTGTCTCTCTCAGGAAATCGGTTAAATGGAAGCATTCCAGATGCCTTGTCCTTATTAACTCAGTTGTCAAACTTGGACTTTTCAAATAACAACTTGAGTGGTCCGCTGCCTTCTTCAACAGGGAGTTTATCATCTCTTACCACATTGCACTTGCAAAATAATAAACTTTCTGGGTCCCTTTATGTGTTGCAAGACCTGCCTCTTCAAGATCTGGATATAGAGAACAATTTATTCTCTGGGCCAATTCCTCCAAAATTATTATCTATCCCTAATTTCAGTAAAAATGGGAATCCCTTTAATACTACTATCATTCCATCACCTCCTCTTGCGGCCCCTGCACCCATAGGCATGGTTCCATCCCCCCGAGAATCGCCTTGGAAAGTGGCATATGGTCCTTCTGCCCTGACAGCACGAGTGCCTGCAAGTACTAGGAAGTCTTTTATTGCTAAGAGCATCATCTGGATTGCTGGTGCAGGTATTTTTGCATTCATTGTATTGGGAGTTTGTCTTCTAATGTTATGTTGCATTAAGAGGAGGCCGGAGAAGAAAAATGCTAAGAAACTTAATGATGTGGGTGTGTTTGCGGGACCTTTGAATAAACCTACATGCGATGATTCTGTTTTTGGAACAACTAACCAAGAGGAGAAGGGTAAATGTGAAGTACCAAATAGAAGTACAAATTCGATTCCTAAGGTTCAAGATGAACAAGACGTATATTTGAAAGTAGTATCTGCAACTTCTGAATGCAATAATGGTCATCAATCAATGAACACTGGAGGGGGTTCCAAACTTTCACCCCTGCAGCCACCACCAAAACACTCTTTTCCAACCATTTCTGGTGTGAACATCACTATCAATCCGGCTACAGCTACCAAAGAAACTGAAAAACAAGTTATGACAAATTCCATCAAAGTTTATACTGTTGCATTGCTTCAACAATATACGAATAACTTTTCCCAAGAAAACTGTATTGGGGAAGGCACACTAGGACCTGTTTATCAGGCTGAACTCCCTGATGGGAAGCTATTGGCAGTGAGGAAACTGGATGCTACTGCTTCCATGGGGCAGAGTCATGAGCAATTTCTTCTATTGGTGTCCAGCATCTCAAATATTCAGCATGCTAATATTGTAAGGCTTATAGGCTACTGTGCTGAACATAGCCAACGACTACTTGTATACGAGTATTGCAGTAATGGGACCCTACATGATGTATTGCATGGGGACGATGATCAACGAATCAAACTTCCGTGGAATGCACGCATTCGAGTAGCACTTGGAGCTGCCAAAGCTTTAGAGTATCTGCATGAGAACTTTCGGCCACCTATTGTGCATCGAAATTTTAGGTCTACTAATGTTCTTCTGAATGACAATTTGGAAGTTTGCATCTCTGATTGTGGATTAGGGCCATTGTTATCTTCTGGCTCTACGGGTCAGTTATCAGGACGCCTCCTTACTGCTTATGGTTACAGTGCTCCTGAATTTGAGTCTGGAAGTTATACGCAGCAAAGTGATGTCTTCAGTTTTGGTGTTGTAATGTTAGAACTCCTTACTGGACGAAAATCTCATGACAAGTCCCGGCCTCGTGCAGAGCAATTTTTGGTCAGATGGGCTGTTCCTCAACTCCATGACATTGATACCTTGTCAAAAATGGTTGATCCCTGCTTAAGCGGAGCCTATCCTATGAAGTCTTTGTCGCGTTTTGCAGATATTGTTTCTTCATGTCTACAGCGTGAACCTGAATTCCGACCTGCAATGTCGGAAATTGTTCAAGATCTCCAGCGAATGATATGA 2154 0.429 MGSTKLELHVGIFVICVVILAGTFCVGDTDMVDVGAINSLYVSLGSPPLQGWKSVGGDPCAELWQGVACVFSNITAIHLGSMNLGGQLGSNLNFPSILELDLGNNHIEGPIPFTLPPTLRSLSLSGNRLNGSIPDALSLLTQLSNLDFSNNNLSGPLPSSTGSLSSLTTLHLQNNKLSGSLYVLQDLPLQDLDIENNLFSGPIPPKLLSIPNFSKNGNPFNTTIIPSPPLAAPAPIGMVPSPRESPWKVAYGPSALTARVPASTRKSFIAKSIIWIAGAGIFAFIVLGVCLLMLCCIKRRPEKKNAKKLNDVGVFAGPLNKPTCDDSVFGTTNQEEKGKCEVPNRSTNSIPKVQDEQDVYLKVVSATSECNNGHQSMNTGGGSKLSPLQPPPKHSFPTISGVNITINPATATKETEKQVMTNSIKVYTVALLQQYTNNFSQENCIGEGTLGPVYQAELPDGKLLAVRKLDATASMGQSHEQFLLLVSSISNIQHANIVRLIGYCAEHSQRLLVYEYCSNGTLHDVLHGDDDQRIKLPWNARIRVALGAAKALEYLHENFRPPIVHRNFRSTNVLLNDNLEVCISDCGLGPLLSSGSTGQLSGRLLTAYGYSAPEFESGSYTQQSDVFSFGVVMLELLTGRKSHDKSRPRAEQFLVRWAVPQLHDIDTLSKMVDPCLSGAYPMKSLSRFADIVSSCLQREPEFRPAMSEIVQDLQRMI 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00362 717 SUPERFAMILY Protein kinase-like (PK-like) 418 713 IPR011009 -
Phco11g00362 717 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 517 717 - -
Phco11g00362 717 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 405 516 - -
Phco11g00362 717 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 142 231 - -
Phco11g00362 717 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 30 141 - -
Phco11g00362 717 Pfam Protein tyrosine and serine/threonine kinase 442 713 IPR001245 GO:0004672|GO:0006468
Phco11g00362 717 ProSiteProfiles Leucine-rich repeat profile. 166 188 IPR001611 GO:0005515
Phco11g00362 717 Gene3D Phosphorylase Kinase; domain 1 402 516 - -
Phco11g00362 717 Gene3D Transferase(Phosphotransferase) domain 1 517 717 - -
Phco11g00362 717 MobiDBLite consensus disorder prediction 372 391 - -
Phco11g00362 717 Gene3D Ribonuclease Inhibitor 36 228 IPR032675 -
Phco11g00362 717 ProSiteProfiles Leucine-rich repeat profile. 118 140 IPR001611 GO:0005515
Phco11g00362 717 ProSiteProfiles Protein kinase domain profile. 439 717 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00362 717 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 19 716 IPR046959 -
Phco11g00362 717 SUPERFAMILY L domain-like 64 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00362 Phco-Chr11 2346938 2353265 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Phco11g00362 PK_Tyr_Ser-Thr 2.2e-41 CL0016